Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.79□□□□□ -1.8
COL4A4P53420 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.79□□□□□ -1.8
COL4A4P53420 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.79□□□□□ -1.8
COL4A4P53420 AL160175.1-201ENST00000428124 247 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 UBE2V1P1-201ENST00000430836 445 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A4P53420 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A4P53420 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A4P53420 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.79□□□□□ -1.8
COL4A4P53420 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.79□□□□□ -1.8
COL4A4P53420 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.79□□□□□ -1.8
COL4A4P53420 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.79□□□□□ -1.8
COL4A4P53420 NCAPGP2-201ENST00000557911 754 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC3.79□□□□□ -1.8
COL4A4P53420 AC063952.1-203ENST00000634410 658 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
COL4A4P53420 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A4P53420 AC024341.1-201ENST00000526444 1552 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A4P53420 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A4P53420 AP000542.2-201ENST00000623199 6179 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A4P53420 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A4P53420 YES1-203ENST00000577961 4554 ntTSL 5 BASIC3.78□□□□□ -1.8
COL4A4P53420 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A4P53420 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL4A4P53420 U3.19-201ENST00000390893 196 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.78□□□□□ -1.8
COL4A4P53420 RNU6-233P-201ENST00000410845 141 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AC004552.1-201ENST00000419089 348 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.78□□□□□ -1.8
COL4A4P53420 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.78□□□□□ -1.8
COL4A4P53420 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.78□□□□□ -1.8
COL4A4P53420 RPS26P3-201ENST00000470205 348 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 NPM1P17-201ENST00000479221 602 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AC073522.1-201ENST00000483312 377 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AC090543.2-201ENST00000483963 348 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AC004057.1-201ENST00000485827 348 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.78□□□□□ -1.8
COL4A4P53420 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.78□□□□□ -1.8
COL4A4P53420 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.78□□□□□ -1.8
COL4A4P53420 CKS1BP3-201ENST00000600888 237 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AC084036.1-201ENST00000609190 508 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 AC093849.1-201ENST00000563631 2209 ntBASIC3.78□□□□□ -1.8
COL4A4P53420 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A4P53420 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A4P53420 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.78□□□□□ -1.8
COL4A4P53420 CROT-204ENST00000442291 1993 ntTSL 5 BASIC3.78□□□□□ -1.8
COL4A4P53420 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A4P53420 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A4P53420 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
COL4A4P53420 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.78□□□□□ -1.8
COL4A4P53420 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.78□□□□□ -1.8
COL4A4P53420 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
COL4A4P53420 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.78□□□□□ -1.81
COL4A4P53420 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.78□□□□□ -1.81
COL4A4P53420 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.78□□□□□ -1.81
COL4A4P53420 HMGB1P16-201ENST00000447155 540 ntBASIC3.78□□□□□ -1.81
COL4A4P53420 MTND2P25-201ENST00000449028 610 ntBASIC3.78□□□□□ -1.81
COL4A4P53420 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.78□□□□□ -1.81
COL4A4P53420 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.78□□□□□ -1.81
COL4A4P53420 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.78□□□□□ -1.81
COL4A4P53420 RPL21P13-201ENST00000488305 481 ntBASIC3.78□□□□□ -1.81
COL4A4P53420 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.78□□□□□ -1.81
COL4A4P53420 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.78□□□□□ -1.81
COL4A4P53420 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.78□□□□□ -1.81
COL4A4P53420 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.81
COL4A4P53420 UBE2NP1-201ENST00000545592 458 ntBASIC3.78□□□□□ -1.81
COL4A4P53420 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.78□□□□□ -1.81
COL4A4P53420 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC3.78□□□□□ -1.81
COL4A4P53420 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC3.78□□□□□ -1.81
COL4A4P53420 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
COL4A4P53420 AC022149.2-201ENST00000621061 203 ntBASIC3.78□□□□□ -1.81
COL4A4P53420 AL590396.2-201ENST00000636511 1041 ntBASIC3.78□□□□□ -1.81
COL4A4P53420 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A4P53420 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A4P53420 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A4P53420 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
COL4A4P53420 SAGE2P-201ENST00000420011 2126 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A4P53420 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A4P53420 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
COL4A4P53420 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
COL4A4P53420 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
COL4A4P53420 RNA5SP126-201ENST00000365092 109 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 LIPT1P1-201ENST00000415870 1186 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A4P53420 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A4P53420 AC008065.1-201ENST00000428525 348 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A4P53420 BTBD7P2-201ENST00000441962 620 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 AC109925.1-201ENST00000478069 331 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A4P53420 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A4P53420 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 AC068722.2-201ENST00000618734 544 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 AP002371.2-201ENST00000624450 503 ntBASIC3.77□□□□□ -1.81
COL4A4P53420 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms