Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX3P41225 AL445363.3-201ENST00000623080 671 ntBASIC3.97□□□□□ -1.77
SOX3P41225 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SOX3P41225 AC017104.5-201ENST00000637647 639 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AC005261.4-201ENST00000600047 1385 ntBASIC3.97□□□□□ -1.77
SOX3P41225 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SOX3P41225 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SOX3P41225 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.97□□□□□ -1.77
SOX3P41225 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.97□□□□□ -1.77
SOX3P41225 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SOX3P41225 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.96□□□□□ -1.77
SOX3P41225 AC009951.1-201ENST00000623674 2614 ntBASIC3.96□□□□□ -1.77
SOX3P41225 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 DDX18P3-201ENST00000404856 2007 ntBASIC3.96□□□□□ -1.78
SOX3P41225 ZNF29P-201ENST00000225587 168 ntBASIC3.96□□□□□ -1.78
SOX3P41225 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 NCSTNP1-201ENST00000406229 144 ntBASIC3.96□□□□□ -1.78
SOX3P41225 RNA5SP36-201ENST00000410197 133 ntBASIC3.96□□□□□ -1.78
SOX3P41225 MIR1911-201ENST00000410783 80 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX3P41225 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX3P41225 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.96□□□□□ -1.78
SOX3P41225 RPL23AP38-201ENST00000423801 469 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AL157831.1-201ENST00000426134 473 ntBASIC3.96□□□□□ -1.78
SOX3P41225 MTCYBP15-201ENST00000433123 1127 ntBASIC3.96□□□□□ -1.78
SOX3P41225 GTF2IP3-201ENST00000433887 494 ntBASIC3.96□□□□□ -1.78
SOX3P41225 CEACAMP1-201ENST00000434624 1035 ntBASIC3.96□□□□□ -1.78
SOX3P41225 HMGB1P45-201ENST00000435986 653 ntBASIC3.96□□□□□ -1.78
SOX3P41225 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX3P41225 ELOCP8-201ENST00000439309 332 ntBASIC3.96□□□□□ -1.78
SOX3P41225 ELOCP15-201ENST00000442090 332 ntBASIC3.96□□□□□ -1.78
SOX3P41225 YWHAQP9-201ENST00000445891 512 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX3P41225 HPRT1P2-201ENST00000505250 544 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC091860.1-201ENST00000505723 432 ntBASIC3.96□□□□□ -1.78
SOX3P41225 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 RNA5SP519-201ENST00000516480 119 ntBASIC3.96□□□□□ -1.78
SOX3P41225 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX3P41225 MRPL49P2-201ENST00000521066 465 ntBASIC3.96□□□□□ -1.78
SOX3P41225 NPM1P6-201ENST00000521088 871 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.96□□□□□ -1.78
SOX3P41225 COX6B1P6-201ENST00000522347 255 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC010306.1-201ENST00000523223 1117 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX3P41225 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.96□□□□□ -1.78
SOX3P41225 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.96□□□□□ -1.78
SOX3P41225 MTCO1P40-201ENST00000574371 625 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX3P41225 AC006116.5-201ENST00000591936 559 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC123786.2-201ENST00000603459 275 ntBASIC3.96□□□□□ -1.78
SOX3P41225 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.78
SOX3P41225 MIR432-201ENST00000606207 94 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC012603.1-201ENST00000606424 528 ntBASIC3.96□□□□□ -1.78
SOX3P41225 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 AC009704.2-201ENST00000618739 483 ntBASIC3.96□□□□□ -1.78
SOX3P41225 AC092608.3-201ENST00000625017 386 ntBASIC3.96□□□□□ -1.78
SOX3P41225 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.96□□□□□ -1.78
SOX3P41225 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX3P41225 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
SOX3P41225 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SOX3P41225 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SOX3P41225 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SOX3P41225 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
SOX3P41225 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.95□□□□□ -1.78
SOX3P41225 AC111188.2-201ENST00000529697 1387 ntBASIC3.95□□□□□ -1.78
SOX3P41225 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SOX3P41225 RNA5SP388-201ENST00000362584 119 ntBASIC3.95□□□□□ -1.78
SOX3P41225 RNU1-14P-201ENST00000362759 152 ntBASIC3.95□□□□□ -1.78
SOX3P41225 MIR92A2-201ENST00000385299 75 ntBASIC3.95□□□□□ -1.78
SOX3P41225 AL161909.1-201ENST00000397390 712 ntBASIC3.95□□□□□ -1.78
SOX3P41225 ATP5F1P2-201ENST00000398143 760 ntBASIC3.95□□□□□ -1.78
SOX3P41225 MTCO1P56-201ENST00000401674 224 ntBASIC3.95□□□□□ -1.78
SOX3P41225 FABP12P1-201ENST00000401911 322 ntBASIC3.95□□□□□ -1.78
SOX3P41225 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SOX3P41225 RNU6-77P-201ENST00000410554 91 ntBASIC3.95□□□□□ -1.78
SOX3P41225 RN7SKP235-201ENST00000410662 305 ntBASIC3.95□□□□□ -1.78
SOX3P41225 MTATP6P20-201ENST00000414147 562 ntBASIC3.95□□□□□ -1.78
SOX3P41225 AC114814.2-201ENST00000419195 485 ntBASIC3.95□□□□□ -1.78
SOX3P41225 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SOX3P41225 EIF1P3-201ENST00000423841 334 ntBASIC3.95□□□□□ -1.78
SOX3P41225 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.95□□□□□ -1.78
SOX3P41225 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.95□□□□□ -1.78
SOX3P41225 AC092013.1-201ENST00000438795 332 ntBASIC3.95□□□□□ -1.78
SOX3P41225 OR10R1P-201ENST00000441524 1141 ntBASIC3.95□□□□□ -1.78
SOX3P41225 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
SOX3P41225 AC104306.1-201ENST00000449702 371 ntBASIC3.95□□□□□ -1.78
SOX3P41225 ABCF2P2-201ENST00000450549 296 ntBASIC3.95□□□□□ -1.78
SOX3P41225 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC3.95□□□□□ -1.78
SOX3P41225 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SOX3P41225 AC103987.1-201ENST00000473394 348 ntBASIC3.95□□□□□ -1.78
SOX3P41225 RN7SL809P-201ENST00000482040 297 ntBASIC3.95□□□□□ -1.78
SOX3P41225 AC073522.1-201ENST00000483312 377 ntBASIC3.95□□□□□ -1.78
SOX3P41225 RPS6P4-201ENST00000494693 758 ntBASIC3.95□□□□□ -1.78
SOX3P41225 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms