Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL6A1P12109 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL6A1P12109 CYCSP46-201ENST00000423569 204 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A1P12109 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A1P12109 ISCA1P1-201ENST00000426679 387 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A1P12109 AL161722.2-201ENST00000434731 981 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A1P12109 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 AC239367.2-201ENST00000447309 705 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A1P12109 MTCO3P38-201ENST00000468910 766 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 RN7SL319P-201ENST00000480656 221 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC096751.1-202ENST00000502691 1067 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 SLC25A15P5-201ENST00000508033 253 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A1P12109 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A1P12109 PDCD5P1-201ENST00000543528 309 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A1P12109 NMNAT1P1-201ENST00000554095 876 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A1P12109 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 AC090515.3-201ENST00000560431 315 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AP005205.1-201ENST00000563503 508 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A1P12109 MIR4716-201ENST00000579628 84 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 MIR4666A-201ENST00000580160 79 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 MIR4715-201ENST00000584117 79 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC115085.1-201ENST00000588924 229 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AP005137.2-201ENST00000609238 400 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC244107.2-201ENST00000611773 76 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 AC023158.2-201ENST00000614876 543 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 MIR7844-201ENST00000616161 122 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 AC099063.3-201ENST00000642066 185 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A1P12109 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A1P12109 SLC10A5P1-201ENST00000379063 1306 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL6A1P12109 ATP8A2P3-201ENST00000426792 1536 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 MTCO1P6-201ENST00000481192 1384 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
COL6A1P12109 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
COL6A1P12109 AC092162.3-201ENST00000624511 1624 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
COL6A1P12109 SNORA75-201ENST00000384158 137 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 PPIAP9-201ENST00000403866 498 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 MIR1193-201ENST00000408109 78 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 FNDC3CP-201ENST00000420795 1155 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A1P12109 AC234779.1-201ENST00000425910 285 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 IPMKP1-201ENST00000425988 855 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC010975.2-201ENST00000427781 588 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A1P12109 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A1P12109 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
COL6A1P12109 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A1P12109 RPL7P29-201ENST00000437151 728 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 TRIM60P18-201ENST00000441518 828 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A1P12109 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A1P12109 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A1P12109 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.68□□□□□ -1.5
COL6A1P12109 SSXP1-201ENST00000453640 473 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 RPL37P3-201ENST00000456825 293 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A1P12109 RPL7AP28-201ENST00000464513 571 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC022133.1-201ENST00000490961 571 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC5.68□□□□□ -1.5
COL6A1P12109 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A1P12109 AK3P4-201ENST00000504283 583 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC5.68□□□□□ -1.5
COL6A1P12109 MTND2P33-201ENST00000506452 1031 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.68□□□□□ -1.5
COL6A1P12109 IGKV2-36-201ENST00000519999 223 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A1P12109 AC083923.1-201ENST00000523708 376 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 OR4G1P-201ENST00000588632 938 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC083760.1-201ENST00000589621 670 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC5.68□□□□□ -1.5
COL6A1P12109 EIF1P6-201ENST00000600054 334 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 AC016727.1-205ENST00000605437 569 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms