Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 HMGB3P9-201ENST00000441799 583 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC022364.2-201ENST00000457963 554 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC092757.1-201ENST00000467293 467 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AP000797.2-201ENST00000475768 606 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 RN7SL273P-201ENST00000481561 299 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 FAM172BP-201ENST00000487497 1089 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AP001893.2-201ENST00000526949 202 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 TRIM51DP-201ENST00000529746 596 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC092747.2-201ENST00000545069 983 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 CBX3P5-201ENST00000552017 521 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AL157687.1-201ENST00000554853 619 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 FAM106CP-201ENST00000582212 507 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 YWHAEP7-203ENST00000622054 312 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 MIR3662-201ENST00000637030 95 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC117529.2-201ENST00000512159 2068 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AL731566.1-201ENST00000620490 1937 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC114786.1-201ENST00000512892 1415 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL034370.1-201ENST00000397254 1590 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RNU6-501P-201ENST00000364072 100 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.296-201ENST00000364930 108 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RNU6-877P-201ENST00000383868 107 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 MT-TR-201ENST00000387439 65 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 SNORA40.3-201ENST00000390964 122 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RPL12P9-201ENST00000412942 488 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RPL17P12-201ENST00000413391 526 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 USP9YP27-201ENST00000418455 438 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RPS3P2-201ENST00000421346 701 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL662874.1-201ENST00000426065 230 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL009174.1-201ENST00000426577 416 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 HSPE1P16-201ENST00000426640 348 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RPL39P6-201ENST00000448289 150 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 PDSS1P2-201ENST00000449397 678 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RBMY2TP-201ENST00000451162 947 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RPL7AP52-201ENST00000458096 790 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 XACT-201ENST00000468762 497 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 MTND4LP22-201ENST00000508209 276 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 ATG10-208ENST00000513634 618 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 PSMB7P1-201ENST00000556349 514 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC108738.1-201ENST00000603703 237 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC005962.2-201ENST00000611427 652 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC023158.2-201ENST00000614876 543 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL158196.1-201ENST00000616786 434 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 uc_338.7-201ENST00000621834 124 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms