Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AP001781.1-201ENST00000530977 207 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.48□□□□□ -1.53
NUP88Q99567 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.48□□□□□ -1.53
NUP88Q99567 AC068993.1-201ENST00000546724 589 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 AC091515.1-201ENST00000548110 679 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 FKBP1BP1-201ENST00000553366 325 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.48□□□□□ -1.53
NUP88Q99567 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC5.48□□□□□ -1.53
NUP88Q99567 OR4K7P-201ENST00000580232 945 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.48□□□□□ -1.53
NUP88Q99567 Z94722.1-201ENST00000604328 474 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 AL360219.1-201ENST00000610230 366 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 AL121873.1-201ENST00000616013 524 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
NUP88Q99567 AC026422.1-201ENST00000623961 452 ntBASIC5.48□□□□□ -1.53
NUP88Q99567 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
NUP88Q99567 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
NUP88Q99567 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
NUP88Q99567 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
NUP88Q99567 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
NUP88Q99567 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
NUP88Q99567 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
NUP88Q99567 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
NUP88Q99567 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NUP88Q99567 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NUP88Q99567 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.47□□□□□ -1.53
NUP88Q99567 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NUP88Q99567 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
NUP88Q99567 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.47□□□□□ -1.53
NUP88Q99567 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NUP88Q99567 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.47□□□□□ -1.53
NUP88Q99567 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NUP88Q99567 OR5H2-201ENST00000355273 945 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
NUP88Q99567 RNA5SP397-201ENST00000391323 118 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 COX6CP17-201ENST00000421389 185 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 MTCO3P1-205ENST00000422088 832 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AL732292.1-201ENST00000426692 226 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.47□□□□□ -1.53
NUP88Q99567 AL365396.1-201ENST00000430854 671 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AL050321.1-201ENST00000432363 400 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC010881.1-201ENST00000433830 235 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 MTND5P2-201ENST00000442927 1142 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AL031584.1-201ENST00000447169 754 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 RPL12P26-201ENST00000452430 487 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AL109741.2-201ENST00000455561 343 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
NUP88Q99567 AC090686.1-201ENST00000481577 749 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 LINC00888-204ENST00000487386 421 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC026979.1-201ENST00000492525 396 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 MTCO1P30-201ENST00000515244 580 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 RNU6-1129P-201ENST00000515964 104 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 FTH1P11-201ENST00000517577 551 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.47□□□□□ -1.53
NUP88Q99567 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC5.47□□□□□ -1.53
NUP88Q99567 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.47□□□□□ -1.53
NUP88Q99567 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC5.47□□□□□ -1.53
NUP88Q99567 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.47□□□□□ -1.53
NUP88Q99567 AC138915.2-201ENST00000569776 97 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 CYCSP40-201ENST00000575927 294 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.47□□□□□ -1.53
NUP88Q99567 AC013444.2-201ENST00000603317 787 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC069304.3-201ENST00000603938 1084 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC114878.2-201ENST00000604863 1251 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC018638.7-201ENST00000605836 1114 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC019193.2-201ENST00000610012 634 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC005332.6-201ENST00000613178 446 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AL731566.2-201ENST00000618971 317 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC009039.2-201ENST00000624524 529 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC010608.2-201ENST00000624830 470 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 AC126323.6-202ENST00000568092 3511 ntBASIC5.47□□□□□ -1.53
NUP88Q99567 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.47□□□□□ -1.53
NUP88Q99567 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NUP88Q99567 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.47□□□□□ -1.53
NUP88Q99567 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NUP88Q99567 SGO1P2-201ENST00000429458 1589 ntBASIC5.46□□□□□ -1.53
NUP88Q99567 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.53
NUP88Q99567 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
NUP88Q99567 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NUP88Q99567 AL672167.1-205ENST00000641112 3080 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
NUP88Q99567 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.46□□□□□ -1.54
NUP88Q99567 RNU6-444P-201ENST00000383988 108 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 MIR129-1-201ENST00000384972 72 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 EI24P3-201ENST00000399046 1062 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 ARL4AP5-201ENST00000404372 599 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 HNRNPDP2-201ENST00000406475 478 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 MIR1271-201ENST00000408537 86 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.46□□□□□ -1.54
NUP88Q99567 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.46□□□□□ -1.54
NUP88Q99567 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.46□□□□□ -1.54
NUP88Q99567 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC5.46□□□□□ -1.54
NUP88Q99567 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.46□□□□□ -1.54
NUP88Q99567 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC5.46□□□□□ -1.54
NUP88Q99567 RPL21P133-201ENST00000443666 476 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 EEF1A1P1-201ENST00000447052 739 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 MTND6P6-201ENST00000478031 263 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 RPL36AP41-201ENST00000493820 306 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 RPF2P2-201ENST00000504693 896 ntBASIC5.46□□□□□ -1.54
NUP88Q99567 AC025674.1-201ENST00000507074 324 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms