Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC087312.1-201ENST00000471411 480 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC109458.1-201ENST00000508858 316 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AL096803.3-201ENST00000609032 532 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 SNORA7.4-201ENST00000384249 137 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 DYNLL1P7-201ENST00000429273 258 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC026333.2-201ENST00000542164 106 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC015871.5-202ENST00000623252 701 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AL355596.1-201ENST00000565399 3996 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 IL6-203ENST00000401651 539 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 RPS29P31-201ENST00000446147 164 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AC008489.1-201ENST00000524271 483 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 AL139174.1-201ENST00000531489 886 ntBASIC3.26□□□□□ -1.89
VPS13AQ96RL7 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AL672296.1-201ENST00000427780 2158 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AL603825.1-201ENST00000438481 80 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC099063.2-201ENST00000446360 662 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC023598.1-201ENST00000472521 361 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC126389.1-201ENST00000477436 290 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AL035404.1-201ENST00000497982 568 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC241585.2-209ENST00000638217 143 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 UBE3AP2-201ENST00000429033 2259 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AL513174.1-201ENST00000423182 629 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC233981.1-201ENST00000423224 461 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC090877.1-201ENST00000561418 344 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AL162574.2-201ENST00000614618 657 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AC116096.1-201ENST00000566804 2314 ntBASIC3.25□□□□□ -1.89
VPS13AQ96RL7 AL445529.1-201ENST00000398713 389 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AL079342.1-201ENST00000401460 267 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 MOB1AP1-201ENST00000430903 535 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 BX119904.1-201ENST00000432026 348 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AP002404.1-201ENST00000532005 451 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 UBL5P2-201ENST00000583788 219 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 ELOCP29-201ENST00000588193 334 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AC006946.3-201ENST00000609791 756 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AC112198.2-201ENST00000426589 6996 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 PALLD-201ENST00000261509 5809 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 PPP1R11P1-201ENST00000486095 376 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 RPL7P47-201ENST00000497299 556 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms