Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORD27.1-201ENST00000516319 72 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 NARSP2-201ENST00000518524 679 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 SUMO2P20-201ENST00000520803 283 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC068587.5-201ENST00000528506 175 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 OR10G5P-201ENST00000532733 358 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC068831.4-201ENST00000556118 109 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC002310.3-201ENST00000569728 723 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC127024.5-201ENST00000580085 462 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC026898.1-201ENST00000586404 571 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC067852.4-201ENST00000590314 478 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC010591.1-201ENST00000603941 649 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC090574.1-201ENST00000623186 233 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AL596275.2-208ENST00000641192 594 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC097063.1-201ENST00000426714 1797 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 SMG1P6-201ENST00000532337 2930 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RNU2-39P-201ENST00000410604 198 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RNA5SP107-201ENST00000411358 122 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AL391219.1-201ENST00000422570 483 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC007568.1-201ENST00000422912 471 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 OR2AS1P-201ENST00000427827 319 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC245291.3-201ENST00000443400 292 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RPS18P1-201ENST00000447840 458 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RN7SL165P-201ENST00000477476 291 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 OR9A1P-202ENST00000484361 945 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 GM2AP2-201ENST00000491764 562 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC135721.1-201ENST00000497954 479 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 FGF7P4-201ENST00000509595 295 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 Y_RNA.701-201ENST00000516812 110 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RNU6-64P-201ENST00000517119 105 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RN7SKP234-201ENST00000517173 224 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 CR383656.7-201ENST00000548164 174 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AL031176.1-201ENST00000604554 466 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 NQO2-209ENST00000606474 470 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AL442067.2-201ENST00000614033 363 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 MIR7159-201ENST00000620587 66 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC089999.3-201ENST00000622440 577 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 DRG1-207ENST00000629688 309 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AL450326.2-201ENST00000421913 1962 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms