Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 FAM106CP-201ENST00000582212 507 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AL117336.2-201ENST00000602435 335 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AL390816.3-201ENST00000604527 1066 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AC012557.1-201ENST00000607115 611 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 Y_RNA.804-201ENST00000615262 101 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 uc_338.18-201ENST00000615451 175 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 uc_338.7-201ENST00000621834 124 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AC099063.3-201ENST00000642066 185 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 MTND5P26-201ENST00000426018 1752 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 VN2R3P-201ENST00000422626 1412 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AC138393.1-206ENST00000540997 1886 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AP000473.2-201ENST00000602659 1537 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
USP39Q53GS9 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 AC073055.1-201ENST00000456901 1621 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 OR10J6P-201ENST00000289731 930 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
USP39Q53GS9 RNA5SP87-201ENST00000384155 118 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 RNU6-253P-201ENST00000384730 105 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 FGF7P8-201ENST00000402994 292 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 AL139098.1-201ENST00000407291 389 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 LINC01347-201ENST00000417964 355 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC5.27□□□□□ -1.57
USP39Q53GS9 SLC44A3-AS1-205ENST00000424505 612 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.27□□□□□ -1.57
USP39Q53GS9 MTCO3P18-201ENST00000440206 761 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 AL034418.1-201ENST00000448675 860 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 PAXBP1P1-201ENST00000449315 447 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 DDX39BP2-208ENST00000453923 258 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 XACT-201ENST00000468762 497 ntTSL 5 BASIC5.27□□□□□ -1.57
USP39Q53GS9 HMGN1P10-201ENST00000474557 553 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.27□□□□□ -1.57
USP39Q53GS9 RN7SL481P-201ENST00000477764 299 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 HMGN2P25-201ENST00000486956 268 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 AC090071.1-201ENST00000507713 644 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC5.27□□□□□ -1.57
USP39Q53GS9 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 RAB11AP2-201ENST00000545905 639 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 NTS-203ENST00000551529 801 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC5.27□□□□□ -1.57
USP39Q53GS9 SULT1C2P2-201ENST00000562517 294 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 EIF5A2P1-201ENST00000564027 460 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.27□□□□□ -1.57
USP39Q53GS9 MTCO2P22-201ENST00000603246 681 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 AC012360.2-201ENST00000609349 391 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 AC106028.5-201ENST00000610332 395 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 AC104260.1-201ENST00000616660 539 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 MTND1P37-201ENST00000636562 264 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 CASC19-206ENST00000641028 1430 ntBASIC5.27□□□□□ -1.57
USP39Q53GS9 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
USP39Q53GS9 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.27□□□□□ -1.57
USP39Q53GS9 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
USP39Q53GS9 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
USP39Q53GS9 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP39Q53GS9 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
USP39Q53GS9 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP39Q53GS9 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
USP39Q53GS9 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms