Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.53□□□□□ -1.52
RNF4P78317 RPS7P3-201ENST00000443360 580 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AL359955.2-201ENST00000445380 353 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC004980.3-201ENST00000447046 365 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AL162739.1-201ENST00000450606 307 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 ACA64.4-201ENST00000459070 127 ntBASIC5.53□□□□□ -1.52
RNF4P78317 ACA64.1-201ENST00000459171 127 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AL122020.1-201ENST00000472287 459 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.53□□□□□ -1.52
RNF4P78317 MTCO3P9-201ENST00000506989 781 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC010486.1-201ENST00000511793 424 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.53□□□□□ -1.52
RNF4P78317 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC5.53□□□□□ -1.52
RNF4P78317 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.53□□□□□ -1.52
RNF4P78317 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 AC022861.1-201ENST00000522981 663 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.53□□□□□ -1.52
RNF4P78317 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC5.53□□□□□ -1.52
RNF4P78317 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC5.53□□□□□ -1.52
RNF4P78317 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.53□□□□□ -1.52
RNF4P78317 MIR4776-2-201ENST00000580204 80 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.53□□□□□ -1.52
RNF4P78317 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 BX664608.1-201ENST00000610519 487 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC090574.1-201ENST00000623186 233 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.53□□□□□ -1.52
RNF4P78317 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RNF4P78317 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RNF4P78317 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
RNF4P78317 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.53□□□□□ -1.52
RNF4P78317 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.53□□□□□ -1.52
RNF4P78317 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RNF4P78317 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.53□□□□□ -1.52
RNF4P78317 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RNF4P78317 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 THAP12P9-201ENST00000503971 2360 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC027088.4-201ENST00000611559 1947 ntBASIC5.52□□□□□ -1.53
RNF4P78317 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.52□□□□□ -1.53
RNF4P78317 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
RNF4P78317 AL353796.1-201ENST00000561542 3241 ntBASIC5.52□□□□□ -1.53
RNF4P78317 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.52□□□□□ -1.53
RNF4P78317 AC087516.1-201ENST00000561236 2428 ntBASIC5.52□□□□□ -1.53
RNF4P78317 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 RNU6-845P-201ENST00000362578 103 ntBASIC5.52□□□□□ -1.53
RNF4P78317 RN7SKP128-201ENST00000364270 303 ntBASIC5.52□□□□□ -1.53
RNF4P78317 SNORA51.6-201ENST00000384151 125 ntBASIC5.52□□□□□ -1.53
RNF4P78317 Y_RNA.548-201ENST00000384656 105 ntBASIC5.52□□□□□ -1.53
RNF4P78317 MIR92A2-201ENST00000385299 75 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC016739.1-201ENST00000405359 345 ntBASIC5.52□□□□□ -1.53
RNF4P78317 HMGN1P20-201ENST00000411849 300 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AL354890.1-201ENST00000413730 346 ntBASIC5.52□□□□□ -1.53
RNF4P78317 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.52□□□□□ -1.53
RNF4P78317 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.52□□□□□ -1.53
RNF4P78317 MRPL50P2-201ENST00000416821 482 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 AL445928.1-201ENST00000435545 222 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 HMGN1P36-201ENST00000446623 298 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.52□□□□□ -1.53
RNF4P78317 HLA-DPA3-207ENST00000454398 229 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.52□□□□□ -1.53
RNF4P78317 AC083798.1-201ENST00000472671 131 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC104563.1-201ENST00000476147 376 ntBASIC5.52□□□□□ -1.53
RNF4P78317 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 AL035690.1-201ENST00000490892 383 ntBASIC5.52□□□□□ -1.53
RNF4P78317 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.52□□□□□ -1.53
RNF4P78317 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC5.52□□□□□ -1.53
RNF4P78317 ZNF705CP-201ENST00000530515 889 ntBASIC5.52□□□□□ -1.53
RNF4P78317 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.52□□□□□ -1.53
RNF4P78317 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.52□□□□□ -1.53
RNF4P78317 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.52□□□□□ -1.53
RNF4P78317 AC090515.3-201ENST00000560431 315 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.52□□□□□ -1.53
RNF4P78317 AL391813.2-201ENST00000609113 322 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC024940.5-201ENST00000622889 474 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC129915.3-201ENST00000634128 948 ntBASIC5.52□□□□□ -1.53
RNF4P78317 AC099654.6-201ENST00000636487 512 ntBASIC5.52□□□□□ -1.53
RNF4P78317 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
RNF4P78317 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
RNF4P78317 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 AC011504.1-201ENST00000623331 4103 ntBASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms