Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TPMTP4-201ENST00000450749 678 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC244505.3-201ENST00000454598 187 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.98□□□□□ -1.77
SOX3P41225 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 RPL23AP71-201ENST00000470966 469 ntBASIC3.98□□□□□ -1.77
SOX3P41225 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 AC091167.1-201ENST00000492017 396 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC023050.1-201ENST00000498198 304 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 SNORA31.9-201ENST00000516429 84 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 OR5M7P-201ENST00000526140 972 ntBASIC3.98□□□□□ -1.77
SOX3P41225 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 CYCSP29-201ENST00000533731 318 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AL352979.3-201ENST00000553515 247 ntBASIC3.98□□□□□ -1.77
SOX3P41225 TVP23BP1-201ENST00000557500 617 ntBASIC3.98□□□□□ -1.77
SOX3P41225 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 CYP2C60P-201ENST00000566088 139 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC090751.1-201ENST00000566966 267 ntBASIC3.98□□□□□ -1.77
SOX3P41225 RPL23AP97-201ENST00000568955 471 ntBASIC3.98□□□□□ -1.77
SOX3P41225 MTND4LP24-201ENST00000572277 291 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC136624.4-201ENST00000573044 370 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.98□□□□□ -1.77
SOX3P41225 AL160237.3-201ENST00000604114 1013 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC112220.2-201ENST00000605513 533 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AL365400.2-201ENST00000605604 902 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC068787.1-201ENST00000623908 691 ntBASIC3.98□□□□□ -1.77
SOX3P41225 MIR3653-201ENST00000625572 110 ntBASIC3.98□□□□□ -1.77
SOX3P41225 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SOX3P41225 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.98□□□□□ -1.77
SOX3P41225 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 AC018529.3-201ENST00000624212 2254 ntBASIC3.98□□□□□ -1.77
SOX3P41225 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
SOX3P41225 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.98□□□□□ -1.77
SOX3P41225 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX3P41225 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SOX3P41225 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX3P41225 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SOX3P41225 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
SOX3P41225 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX3P41225 IQCB2P-201ENST00000401788 1633 ntBASIC3.97□□□□□ -1.77
SOX3P41225 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SOX3P41225 OR10J6P-201ENST00000289731 930 ntBASIC3.97□□□□□ -1.77
SOX3P41225 ANKRD36P1-201ENST00000344424 659 ntBASIC3.97□□□□□ -1.77
SOX3P41225 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX3P41225 SNORA11C-201ENST00000408532 129 ntBASIC3.97□□□□□ -1.77
SOX3P41225 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.97□□□□□ -1.77
SOX3P41225 RNU2-6P-201ENST00000411404 190 ntBASIC3.97□□□□□ -1.77
SOX3P41225 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX3P41225 RPS7P9-201ENST00000414704 586 ntBASIC3.97□□□□□ -1.77
SOX3P41225 RPL6P29-201ENST00000414863 865 ntBASIC3.97□□□□□ -1.77
SOX3P41225 TAF13P2-201ENST00000416876 286 ntBASIC3.97□□□□□ -1.77
SOX3P41225 MTND4P3-201ENST00000417829 541 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX3P41225 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX3P41225 AC099336.2-201ENST00000422457 254 ntBASIC3.97□□□□□ -1.77
SOX3P41225 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.97□□□□□ -1.77
SOX3P41225 AC073069.1-201ENST00000428657 441 ntBASIC3.97□□□□□ -1.77
SOX3P41225 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
SOX3P41225 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.97□□□□□ -1.77
SOX3P41225 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX3P41225 AC092809.1-201ENST00000441469 474 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AL512326.1-201ENST00000443050 721 ntBASIC3.97□□□□□ -1.77
SOX3P41225 RPS26P30-201ENST00000443431 335 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX3P41225 AC009963.2-201ENST00000453431 138 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AC099560.2-201ENST00000457554 255 ntBASIC3.97□□□□□ -1.77
SOX3P41225 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.97□□□□□ -1.77
SOX3P41225 RPL7P22-201ENST00000466005 733 ntBASIC3.97□□□□□ -1.77
SOX3P41225 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SOX3P41225 RN7SL691P-201ENST00000494487 301 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AC139783.2-201ENST00000504847 1145 ntBASIC3.97□□□□□ -1.77
SOX3P41225 IGBP1P5-201ENST00000507524 1000 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AC008958.1-201ENST00000511047 682 ntBASIC3.97□□□□□ -1.77
SOX3P41225 RNA5SP49-201ENST00000516450 115 ntBASIC3.97□□□□□ -1.77
SOX3P41225 HMGB1P23-201ENST00000518743 568 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX3P41225 LRRC6P1-201ENST00000532188 885 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.97□□□□□ -1.77
SOX3P41225 DYNLL1P4-201ENST00000549314 266 ntBASIC3.97□□□□□ -1.77
SOX3P41225 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX3P41225 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX3P41225 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX3P41225 MTCYBP23-201ENST00000558717 1102 ntBASIC3.97□□□□□ -1.77
SOX3P41225 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.97□□□□□ -1.77
SOX3P41225 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX3P41225 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX3P41225 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SOX3P41225 VN1R88P-201ENST00000596787 292 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AL157392.4-201ENST00000609756 345 ntBASIC3.97□□□□□ -1.77
SOX3P41225 AC007546.1-201ENST00000619452 559 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 148.8 ms