Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CUX1P39880 RNU1-140P-201ENST00000365040 165 ntBASIC5.67□□□□□ -1.5
CUX1P39880 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
CUX1P39880 RNU4-47P-201ENST00000410876 114 ntBASIC5.67□□□□□ -1.5
CUX1P39880 Z99755.1-201ENST00000414048 380 ntBASIC5.67□□□□□ -1.5
CUX1P39880 AC008065.1-201ENST00000428525 348 ntBASIC5.67□□□□□ -1.5
CUX1P39880 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.67□□□□□ -1.5
CUX1P39880 AC074367.1-201ENST00000438685 1125 ntBASIC5.67□□□□□ -1.5
CUX1P39880 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CUX1P39880 ANP32BP2-201ENST00000454525 545 ntBASIC5.67□□□□□ -1.5
CUX1P39880 RPL5P30-201ENST00000465511 891 ntBASIC5.67□□□□□ -1.5
CUX1P39880 RN7SL429P-201ENST00000479090 223 ntBASIC5.67□□□□□ -1.5
CUX1P39880 RN7SL489P-201ENST00000486185 223 ntBASIC5.67□□□□□ -1.5
CUX1P39880 RN7SL327P-201ENST00000488659 223 ntBASIC5.67□□□□□ -1.5
CUX1P39880 AC005798.1-201ENST00000513715 387 ntBASIC5.67□□□□□ -1.5
CUX1P39880 OR4R3P-201ENST00000525084 838 ntBASIC5.67□□□□□ -1.5
CUX1P39880 AC093732.2-201ENST00000607950 274 ntBASIC5.67□□□□□ -1.5
CUX1P39880 RN7SL853P-201ENST00000617250 223 ntBASIC5.67□□□□□ -1.5
CUX1P39880 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.67□□□□□ -1.5
CUX1P39880 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.67□□□□□ -1.5
CUX1P39880 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CUX1P39880 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC5.66□□□□□ -1.5
CUX1P39880 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CUX1P39880 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CUX1P39880 RNU6-283P-201ENST00000364788 107 ntBASIC5.66□□□□□ -1.5
CUX1P39880 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CUX1P39880 RN7SL863P-201ENST00000462370 296 ntBASIC5.66□□□□□ -1.5
CUX1P39880 RPS3AP43-201ENST00000479743 781 ntBASIC5.66□□□□□ -1.5
CUX1P39880 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC5.66□□□□□ -1.5
CUX1P39880 BTF3L4P4-201ENST00000506381 449 ntBASIC5.66□□□□□ -1.5
CUX1P39880 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC5.66□□□□□ -1.5
CUX1P39880 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC5.66□□□□□ -1.5
CUX1P39880 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CUX1P39880 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CUX1P39880 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CUX1P39880 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CUX1P39880 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
CUX1P39880 FAM35BP-202ENST00000497389 3337 ntBASIC5.65□□□□□ -1.5
CUX1P39880 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CUX1P39880 ANKRD36P1-201ENST00000344424 659 ntBASIC5.65□□□□□ -1.5
CUX1P39880 AC117434.1-201ENST00000419971 836 ntBASIC5.65□□□□□ -1.5
CUX1P39880 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.65□□□□□ -1.5
CUX1P39880 HMGB3P14-201ENST00000494195 599 ntBASIC5.65□□□□□ -1.5
CUX1P39880 RPL5P23-201ENST00000496040 868 ntBASIC5.65□□□□□ -1.5
CUX1P39880 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC5.65□□□□□ -1.5
CUX1P39880 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC5.65□□□□□ -1.5
CUX1P39880 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC5.65□□□□□ -1.5
CUX1P39880 AC100793.4-201ENST00000613683 429 ntBASIC5.65□□□□□ -1.5
CUX1P39880 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CUX1P39880 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC5.65□□□□□ -1.51
CUX1P39880 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
CUX1P39880 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CUX1P39880 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC5.65□□□□□ -1.51
CUX1P39880 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CUX1P39880 SNORD74.4-201ENST00000364129 80 ntBASIC5.64□□□□□ -1.51
CUX1P39880 CRP-203ENST00000368111 512 ntTSL 3 BASIC5.64□□□□□ -1.51
CUX1P39880 MIR93-201ENST00000385024 80 ntBASIC5.64□□□□□ -1.51
CUX1P39880 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC5.64□□□□□ -1.51
CUX1P39880 AC004069.2-201ENST00000505438 1114 ntBASIC5.64□□□□□ -1.51
CUX1P39880 RNU4ATAC6P-201ENST00000516592 126 ntBASIC5.64□□□□□ -1.51
CUX1P39880 AC026333.2-201ENST00000542164 106 ntBASIC5.64□□□□□ -1.51
CUX1P39880 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.64□□□□□ -1.51
CUX1P39880 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CUX1P39880 AC092435.3-201ENST00000565538 3654 ntBASIC5.64□□□□□ -1.51
CUX1P39880 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC5.64□□□□□ -1.51
CUX1P39880 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.64□□□□□ -1.51
CUX1P39880 AC139783.2-201ENST00000504847 1145 ntBASIC5.64□□□□□ -1.51
CUX1P39880 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC5.64□□□□□ -1.51
CUX1P39880 DUXAP6-201ENST00000553858 601 ntBASIC5.64□□□□□ -1.51
CUX1P39880 AC006023.1-201ENST00000603944 259 ntBASIC5.64□□□□□ -1.51
CUX1P39880 AL157762.1-201ENST00000619612 415 ntBASIC5.64□□□□□ -1.51
CUX1P39880 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CUX1P39880 AL022311.1-201ENST00000623726 19416 ntBASIC5.63□□□□□ -1.51
CUX1P39880 AC125336.1-201ENST00000508893 2827 ntBASIC5.63□□□□□ -1.51
CUX1P39880 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CUX1P39880 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CUX1P39880 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC5.63□□□□□ -1.51
CUX1P39880 RPL12P46-201ENST00000436610 195 ntBASIC5.63□□□□□ -1.51
CUX1P39880 NPM1P29-201ENST00000483112 803 ntBASIC5.63□□□□□ -1.51
CUX1P39880 AC107294.1-201ENST00000609524 467 ntBASIC5.63□□□□□ -1.51
CUX1P39880 RDM1-219ENST00000615378 542 ntTSL 3 BASIC5.63□□□□□ -1.51
CUX1P39880 AC233263.6-201ENST00000631132 1963 ntBASIC5.62□□□□□ -1.51
CUX1P39880 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.62□□□□□ -1.51
CUX1P39880 AC006484.1-201ENST00000435086 1884 ntBASIC5.62□□□□□ -1.51
CUX1P39880 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CUX1P39880 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CUX1P39880 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CUX1P39880 IARS-201ENST00000375627 697 ntTSL 3 BASIC5.62□□□□□ -1.51
CUX1P39880 OR2X1P-201ENST00000421144 687 ntBASIC5.62□□□□□ -1.51
CUX1P39880 COTL1P1-201ENST00000422309 375 ntBASIC5.62□□□□□ -1.51
CUX1P39880 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC5.62□□□□□ -1.51
CUX1P39880 RPS26P15-201ENST00000488067 348 ntBASIC5.62□□□□□ -1.51
CUX1P39880 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
CUX1P39880 AC138409.2-202ENST00000507274 458 ntBASIC5.62□□□□□ -1.51
CUX1P39880 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC5.62□□□□□ -1.51
CUX1P39880 AP000926.4-201ENST00000527351 454 ntBASIC5.62□□□□□ -1.51
CUX1P39880 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC5.62□□□□□ -1.51
CUX1P39880 AP005262.1-201ENST00000582646 997 ntBASIC5.62□□□□□ -1.51
CUX1P39880 BRDTP1-201ENST00000605735 677 ntBASIC5.62□□□□□ -1.51
CUX1P39880 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms