Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-723P-201ENST00000383973 107 ntBASIC5.07□□□□□ -1.6
MSX2P35548 Y_RNA.453-201ENST00000384223 109 ntBASIC5.07□□□□□ -1.6
MSX2P35548 RPS3AP2-201ENST00000407190 754 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AL450992.3-201ENST00000413192 568 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 USP9YP13-201ENST00000417797 480 ntBASIC5.07□□□□□ -1.6
MSX2P35548 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 LINC00993-201ENST00000420453 540 ntBASIC5.07□□□□□ -1.6
MSX2P35548 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 AC007742.1-201ENST00000425789 329 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AC005033.1-201ENST00000428904 813 ntBASIC5.07□□□□□ -1.6
MSX2P35548 VDAC1P6-201ENST00000430062 855 ntBASIC5.07□□□□□ -1.6
MSX2P35548 MTCO2P11-201ENST00000431069 680 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AL513175.1-201ENST00000431492 780 ntBASIC5.07□□□□□ -1.6
MSX2P35548 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 MTND4LP10-201ENST00000435146 291 ntBASIC5.07□□□□□ -1.6
MSX2P35548 ELOCP26-201ENST00000436067 329 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 AL831737.1-201ENST00000441288 271 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 AL033528.1-201ENST00000453780 140 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AL035090.1-201ENST00000454835 332 ntBASIC5.07□□□□□ -1.6
MSX2P35548 SNRPFP4-201ENST00000456366 242 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 AC005229.2-201ENST00000456995 399 ntBASIC5.07□□□□□ -1.6
MSX2P35548 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 RPS23P6-201ENST00000466136 431 ntBASIC5.07□□□□□ -1.6
MSX2P35548 RPL23AP12-201ENST00000467573 473 ntBASIC5.07□□□□□ -1.6
MSX2P35548 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 AP000852.1-201ENST00000472460 573 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AC092754.1-201ENST00000472975 479 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AL035404.1-201ENST00000497982 568 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 HSD3BP3-201ENST00000514706 994 ntBASIC5.07□□□□□ -1.6
MSX2P35548 IGLVIV-64-201ENST00000518581 301 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.07□□□□□ -1.6
MSX2P35548 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 AC068714.1-201ENST00000559623 800 ntBASIC5.07□□□□□ -1.6
MSX2P35548 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 AC090616.5-202ENST00000582111 297 ntBASIC5.07□□□□□ -1.6
MSX2P35548 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
MSX2P35548 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 BNIP3P9-201ENST00000603714 553 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AC009027.1-201ENST00000604510 479 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AL161729.4-201ENST00000604650 476 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AC090578.1-201ENST00000604955 591 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AL354760.1-201ENST00000608357 643 ntBASIC5.07□□□□□ -1.6
MSX2P35548 CRYM-AS1-204ENST00000637983 556 ntBASIC5.07□□□□□ -1.6
MSX2P35548 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 AL031985.3-201ENST00000565390 2449 ntBASIC5.07□□□□□ -1.6
MSX2P35548 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 AL034370.1-201ENST00000397254 1590 ntBASIC5.07□□□□□ -1.6
MSX2P35548 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 ANKRD20A10P-201ENST00000457591 1515 ntBASIC5.07□□□□□ -1.6
MSX2P35548 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX2P35548 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
MSX2P35548 MTND4P12-201ENST00000498999 1377 ntBASIC5.06□□□□□ -1.6
MSX2P35548 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX2P35548 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
MSX2P35548 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
MSX2P35548 CBX3P1-201ENST00000325243 554 ntBASIC5.06□□□□□ -1.6
MSX2P35548 RNU6-582P-201ENST00000362989 107 ntBASIC5.06□□□□□ -1.6
MSX2P35548 RNY4P14-201ENST00000363656 96 ntBASIC5.06□□□□□ -1.6
MSX2P35548 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSX2P35548 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.06□□□□□ -1.6
MSX2P35548 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
MSX2P35548 DBIP1-201ENST00000401435 260 ntBASIC5.06□□□□□ -1.6
MSX2P35548 FCF1P10-201ENST00000407590 479 ntBASIC5.06□□□□□ -1.6
MSX2P35548 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.06□□□□□ -1.6
MSX2P35548 B3GALNT1P1-201ENST00000420569 975 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC062016.2-201ENST00000420950 676 ntBASIC5.06□□□□□ -1.6
MSX2P35548 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC5.06□□□□□ -1.6
MSX2P35548 AC104333.2-201ENST00000422630 192 ntBASIC5.06□□□□□ -1.6
MSX2P35548 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.06□□□□□ -1.6
MSX2P35548 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms