Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 MTCO1P14-201ENST00000441695 1559 ntBASIC4□□□□□ -1.77
HOXA9P31269 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXA9P31269 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXA9P31269 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
HOXA9P31269 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
HOXA9P31269 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.99□□□□□ -1.77
HOXA9P31269 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA9P31269 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
HOXA9P31269 AC007685.1-201ENST00000329806 452 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 U3.15-201ENST00000365398 212 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 SNORA9-201ENST00000384215 133 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 SNORD3H-201ENST00000384486 214 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA9P31269 MTND2P11-201ENST00000423638 648 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AP000907.1-201ENST00000428428 510 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 YWHAEP5-201ENST00000431545 765 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA9P31269 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA9P31269 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA9P31269 RPS3AP46-201ENST00000448352 682 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA9P31269 SNORD105B-201ENST00000458770 79 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA9P31269 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA9P31269 AC005726.1-201ENST00000494679 427 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXA9P31269 AC104619.4-201ENST00000510773 249 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC108471.1-201ENST00000513977 287 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA9P31269 SOD1P3-201ENST00000518682 454 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA9P31269 OR8I1P-201ENST00000529291 931 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA9P31269 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXA9P31269 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA9P31269 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA9P31269 AC020914.6-201ENST00000594327 272 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA9P31269 AL161756.2-201ENST00000604597 246 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC012468.1-201ENST00000604888 430 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AL354760.1-201ENST00000608357 643 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA9P31269 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA9P31269 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA9P31269 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 AC018555.1-201ENST00000567548 1980 ntBASIC3.99□□□□□ -1.77
HOXA9P31269 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HOXA9P31269 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
HOXA9P31269 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA9P31269 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA9P31269 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA9P31269 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA9P31269 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA9P31269 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
HOXA9P31269 RNU4-23P-201ENST00000362839 140 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA9P31269 AC234772.1-201ENST00000377927 937 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA9P31269 JKAMPP1-201ENST00000413804 919 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA9P31269 RPS7P15-201ENST00000415804 584 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 AC048351.1-201ENST00000420064 602 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA9P31269 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA9P31269 UBDP1-202ENST00000457888 382 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA9P31269 RN7SL293P-201ENST00000481765 281 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 CDH12P2-201ENST00000504393 298 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA9P31269 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
HOXA9P31269 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA9P31269 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA9P31269 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA9P31269 AC087888.1-201ENST00000550884 1254 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA9P31269 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA9P31269 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA9P31269 AL592494.3-201ENST00000609485 464 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 AC096577.2-201ENST00000611455 153 ntBASIC3.98□□□□□ -1.77
HOXA9P31269 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA9P31269 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA9P31269 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA9P31269 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
HOXA9P31269 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
HOXA9P31269 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA9P31269 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA9P31269 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA9P31269 AC017002.4-201ENST00000604721 1525 ntBASIC3.97□□□□□ -1.77
HOXA9P31269 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXA9P31269 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA9P31269 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXA9P31269 RNA5SP51-201ENST00000364750 119 ntBASIC3.97□□□□□ -1.77
HOXA9P31269 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXA9P31269 RNU6-891P-201ENST00000384280 111 ntBASIC3.97□□□□□ -1.77
HOXA9P31269 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXA9P31269 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
HOXA9P31269 AC068533.1-201ENST00000418542 415 ntBASIC3.97□□□□□ -1.77
HOXA9P31269 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA9P31269 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA9P31269 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms