Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NTAN1P1-201ENST00000603150 646 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 RNF138P2-201ENST00000603490 592 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC087283.1-201ENST00000604029 1074 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC124312.4-201ENST00000605533 310 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AL008729.2-201ENST00000606393 473 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 MIR6798-201ENST00000612887 67 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC121761.2-201ENST00000617300 689 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC018926.3-201ENST00000618841 406 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AL359757.1-201ENST00000623176 255 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC015908.5-201ENST00000623289 343 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC010608.2-201ENST00000624830 470 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC108751.5-201ENST00000492880 1336 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SMARCA1P28370 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.38□□□□□ -1.55
SMARCA1P28370 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SMARCA1P28370 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC046144.1-201ENST00000478559 1853 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AL731566.1-201ENST00000620490 1937 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 HMGB1P5-201ENST00000255320 642 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SMARCA1P28370 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 SNORD116-9-201ENST00000384000 95 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 SNORD116-3-201ENST00000384287 95 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 SNORD116-7-201ENST00000384404 95 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 SNORD116-5-201ENST00000384462 95 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC073136.2-201ENST00000417282 849 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 AC098592.1-201ENST00000419352 333 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 MRPS36P1-201ENST00000421291 307 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 DPRXP1-201ENST00000426312 460 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 Z93242.1-201ENST00000427102 353 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 ACTR3P2-201ENST00000439585 1257 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 RPS26P2-201ENST00000440331 348 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC5.37□□□□□ -1.55
SMARCA1P28370 CEACAMP6-201ENST00000452007 574 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 ISCUP1-201ENST00000454451 448 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 RPL5P24-201ENST00000463742 885 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 PPIAP21-201ENST00000464473 501 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 AC104763.1-201ENST00000475274 360 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 AC015724.1-201ENST00000478577 156 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 VPS26AP1-201ENST00000483197 979 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC5.37□□□□□ -1.55
SMARCA1P28370 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.37□□□□□ -1.55
SMARCA1P28370 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC091435.1-201ENST00000505442 584 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.37□□□□□ -1.55
SMARCA1P28370 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 MTND1P22-201ENST00000510572 951 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.37□□□□□ -1.55
SMARCA1P28370 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 AP000827.1-201ENST00000527814 258 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.37□□□□□ -1.55
SMARCA1P28370 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC079171.1-201ENST00000568788 914 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 AC090616.2-202ENST00000584248 222 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC131235.4-201ENST00000609288 620 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC5.37□□□□□ -1.55
SMARCA1P28370 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC068620.4-201ENST00000636730 1182 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC109315.1-201ENST00000584143 1347 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC021755.1-201ENST00000559747 1447 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SMARCA1P28370 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.37□□□□□ -1.55
SMARCA1P28370 AC134882.1-201ENST00000603738 1676 ntBASIC5.37□□□□□ -1.55
SMARCA1P28370 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMARCA1P28370 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms