Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GAPDHP39-201ENST00000481866 979 ntBASIC4.81□□□□□ -1.64
BDNFP23560 AP001086.1-201ENST00000494882 321 ntBASIC4.81□□□□□ -1.64
BDNFP23560 HMGN1P15-201ENST00000513870 295 ntBASIC4.81□□□□□ -1.64
BDNFP23560 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.81□□□□□ -1.64
BDNFP23560 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.81□□□□□ -1.64
BDNFP23560 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.81□□□□□ -1.64
BDNFP23560 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.81□□□□□ -1.64
BDNFP23560 ZNF705CP-201ENST00000530515 889 ntBASIC4.81□□□□□ -1.64
BDNFP23560 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 AC068831.4-201ENST00000556118 109 ntBASIC4.81□□□□□ -1.64
BDNFP23560 AC093519.1-201ENST00000566109 298 ntBASIC4.81□□□□□ -1.64
BDNFP23560 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.81□□□□□ -1.64
BDNFP23560 MIR4284-201ENST00000578924 81 ntBASIC4.81□□□□□ -1.64
BDNFP23560 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.81□□□□□ -1.64
BDNFP23560 AC006023.2-201ENST00000609916 167 ntBASIC4.81□□□□□ -1.64
BDNFP23560 MIR6810-201ENST00000622701 70 ntBASIC4.81□□□□□ -1.64
BDNFP23560 AC098679.5-201ENST00000624394 571 ntBASIC4.81□□□□□ -1.64
BDNFP23560 AC048347.1-201ENST00000624621 427 ntBASIC4.81□□□□□ -1.64
BDNFP23560 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.81□□□□□ -1.64
BDNFP23560 DHX9P1-201ENST00000436565 3076 ntBASIC4.81□□□□□ -1.64
BDNFP23560 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.81□□□□□ -1.64
BDNFP23560 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
BDNFP23560 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
BDNFP23560 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 AC117529.2-201ENST00000512159 2068 ntBASIC4.81□□□□□ -1.64
BDNFP23560 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.8□□□□□ -1.64
BDNFP23560 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
BDNFP23560 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
BDNFP23560 AL133383.2-201ENST00000622958 2336 ntBASIC4.8□□□□□ -1.64
BDNFP23560 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
BDNFP23560 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.8□□□□□ -1.64
BDNFP23560 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
BDNFP23560 RNU1-83P-201ENST00000363426 164 ntBASIC4.8□□□□□ -1.64
BDNFP23560 RNU5B-4P-201ENST00000363508 111 ntBASIC4.8□□□□□ -1.64
BDNFP23560 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
BDNFP23560 SDHCP2-201ENST00000398565 501 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AL139098.1-201ENST00000407291 389 ntBASIC4.8□□□□□ -1.64
BDNFP23560 MIR1271-201ENST00000408537 86 ntBASIC4.8□□□□□ -1.64
BDNFP23560 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.8□□□□□ -1.64
BDNFP23560 AC013262.1-201ENST00000426710 252 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.8□□□□□ -1.64
BDNFP23560 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.8□□□□□ -1.64
BDNFP23560 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.8□□□□□ -1.64
BDNFP23560 RPL23AP16-201ENST00000441715 421 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AL121877.1-201ENST00000453704 622 ntBASIC4.8□□□□□ -1.64
BDNFP23560 RN7SL860P-201ENST00000473738 223 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AC010301.1-201ENST00000473936 355 ntBASIC4.8□□□□□ -1.64
BDNFP23560 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.8□□□□□ -1.64
BDNFP23560 RNA5SP73-201ENST00000516744 108 ntBASIC4.8□□□□□ -1.64
BDNFP23560 IGLVIV-65-201ENST00000517313 360 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AC134698.5-201ENST00000519444 336 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.8□□□□□ -1.64
BDNFP23560 MTND1P36-201ENST00000522384 936 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.8□□□□□ -1.64
BDNFP23560 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.8□□□□□ -1.64
BDNFP23560 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.8□□□□□ -1.64
BDNFP23560 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.8□□□□□ -1.64
BDNFP23560 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.8□□□□□ -1.64
BDNFP23560 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.8□□□□□ -1.64
BDNFP23560 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.8□□□□□ -1.64
BDNFP23560 AL356218.2-201ENST00000605264 187 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AC012409.3-201ENST00000611343 981 ntBASIC4.8□□□□□ -1.64
BDNFP23560 AC022106.2-201ENST00000620114 757 ntBASIC4.8□□□□□ -1.64
BDNFP23560 MIR6758-201ENST00000620653 63 ntBASIC4.8□□□□□ -1.64
BDNFP23560 MIR4278-201ENST00000636094 69 ntBASIC4.8□□□□□ -1.64
BDNFP23560 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.8□□□□□ -1.64
BDNFP23560 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.8□□□□□ -1.64
BDNFP23560 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
BDNFP23560 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
BDNFP23560 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
BDNFP23560 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
BDNFP23560 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
BDNFP23560 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
BDNFP23560 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
BDNFP23560 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
BDNFP23560 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.79□□□□□ -1.64
BDNFP23560 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
BDNFP23560 OR56B2P-201ENST00000317102 954 ntBASIC4.79□□□□□ -1.64
BDNFP23560 GCNT6-201ENST00000379591 934 ntBASIC4.79□□□□□ -1.64
BDNFP23560 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.79□□□□□ -1.64
BDNFP23560 OFD1P2Y-201ENST00000421895 1149 ntBASIC4.79□□□□□ -1.64
BDNFP23560 NIPA2P1-201ENST00000426223 976 ntBASIC4.79□□□□□ -1.64
BDNFP23560 C4BPAP2-201ENST00000428434 478 ntBASIC4.79□□□□□ -1.64
BDNFP23560 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.79□□□□□ -1.64
BDNFP23560 ARF4P4-201ENST00000439608 520 ntBASIC4.79□□□□□ -1.64
BDNFP23560 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.79□□□□□ -1.64
BDNFP23560 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.79□□□□□ -1.64
BDNFP23560 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.79□□□□□ -1.64
BDNFP23560 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.79□□□□□ -1.64
BDNFP23560 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.79□□□□□ -1.64
BDNFP23560 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.79□□□□□ -1.64
BDNFP23560 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.79□□□□□ -1.64
BDNFP23560 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.79□□□□□ -1.64
BDNFP23560 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.79□□□□□ -1.64
BDNFP23560 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms