Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC7.09□□□□□ -1.27
COL9A1P20849 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 PAPPA-AS1-201ENST00000445861 2450 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 ABCB4-202ENST00000358400 3826 ntTSL 5 BASIC7.09□□□□□ -1.27
COL9A1P20849 AC091544.5-201ENST00000620192 3815 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC7.09□□□□□ -1.27
COL9A1P20849 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC7.09□□□□□ -1.27
COL9A1P20849 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 GOSR2-238ENST00000640495 3395 ntTSL 5 BASIC7.09□□□□□ -1.27
COL9A1P20849 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 Y_RNA.83-201ENST00000363005 113 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 RNU6-81P-201ENST00000365608 104 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
COL9A1P20849 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
COL9A1P20849 HMGB1P20-201ENST00000402555 677 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 MIR1298-201ENST00000408783 112 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 UQCRHP1-204ENST00000424609 274 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 DUTP4-201ENST00000424782 475 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 AL360081.1-201ENST00000428299 555 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC7.09□□□□□ -1.27
COL9A1P20849 PTMAP6-201ENST00000439110 327 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC7.09□□□□□ -1.27
COL9A1P20849 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC7.09□□□□□ -1.27
COL9A1P20849 SNORD97-201ENST00000459187 142 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 AC108161.1-201ENST00000461060 402 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
COL9A1P20849 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC7.09□□□□□ -1.27
COL9A1P20849 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC7.09□□□□□ -1.27
COL9A1P20849 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC7.09□□□□□ -1.27
COL9A1P20849 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC7.09□□□□□ -1.27
COL9A1P20849 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC7.09□□□□□ -1.27
COL9A1P20849 AC064801.1-201ENST00000612025 407 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 AC107081.3-201ENST00000612715 2034 ntBASIC7.09□□□□□ -1.27
COL9A1P20849 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC7.09□□□□□ -1.27
COL9A1P20849 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC7.09□□□□□ -1.27
COL9A1P20849 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC7.09□□□□□ -1.27
COL9A1P20849 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL9A1P20849 MSL3-206ENST00000380693 2377 ntTSL 2 BASIC7.09□□□□□ -1.28
COL9A1P20849 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
COL9A1P20849 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC7.09□□□□□ -1.28
COL9A1P20849 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC7.09□□□□□ -1.28
COL9A1P20849 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 TRIM51HP-202ENST00000530412 1823 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 HSPA8P14-201ENST00000552265 1805 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC7.08□□□□□ -1.28
COL9A1P20849 KNG1-202ENST00000287611 1720 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC7.08□□□□□ -1.28
COL9A1P20849 AC027088.4-201ENST00000611559 1947 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 AL391987.6-201ENST00000305671 199 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 Y_RNA.183-201ENST00000363882 113 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 SNORA70-201ENST00000384436 135 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC7.08□□□□□ -1.28
COL9A1P20849 RPL21P109-201ENST00000422213 475 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC7.08□□□□□ -1.28
COL9A1P20849 PNKDP1-201ENST00000435914 430 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC7.08□□□□□ -1.28
COL9A1P20849 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC7.08□□□□□ -1.28
COL9A1P20849 CEACAMP9-201ENST00000442990 513 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AL136097.1-201ENST00000456945 913 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AP001992.1-205ENST00000462248 379 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AC087884.1-201ENST00000469738 328 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 CR383656.1-201ENST00000484916 377 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 LINC00960-202ENST00000492922 2126 ntTSL 2 BASIC7.08□□□□□ -1.28
COL9A1P20849 AL139099.1-201ENST00000497398 403 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC7.08□□□□□ -1.28
COL9A1P20849 AC108078.2-201ENST00000510750 236 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 RN7SKP82-201ENST00000516786 223 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC7.08□□□□□ -1.28
COL9A1P20849 CBX3P4-201ENST00000538909 354 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AL121576.1-201ENST00000556055 276 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC7.08□□□□□ -1.28
COL9A1P20849 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.08□□□□□ -1.28
COL9A1P20849 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC7.08□□□□□ -1.28
COL9A1P20849 RPS29P30-201ENST00000600975 111 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AP001823.1-201ENST00000604056 1003 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AP001485.1-201ENST00000604799 199 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AC024940.4-201ENST00000605507 246 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AC012443.1-201ENST00000605605 231 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 AC000123.2-201ENST00000623124 461 ntBASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms