Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL157827.1-201ENST00000447622 132 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AL645939.1-201ENST00000453429 797 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXC4P09017 AC005912.1-201ENST00000495392 255 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AC021146.7-201ENST00000509604 775 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC4P09017 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC4P09017 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC4P09017 SMARCE1P4-201ENST00000523647 241 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC4P09017 CBX3P5-201ENST00000552017 521 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC4P09017 AL360157.1-201ENST00000565962 87 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AC009101.1-201ENST00000568135 242 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 HNRNPCP4-201ENST00000571636 900 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AC141257.3-201ENST00000572906 215 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXC4P09017 MIR4444-1-201ENST00000581696 74 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 MIR4444-2-201ENST00000584390 74 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC4P09017 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC4P09017 MRPS35P3-201ENST00000603189 709 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXC4P09017 AL049634.3-201ENST00000604968 457 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AL121772.2-201ENST00000614331 297 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AL591424.2-201ENST00000617023 128 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 CR392039.5-201ENST00000623201 510 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC4P09017 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC4P09017 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC4P09017 IPO8P1-201ENST00000455509 3109 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC4P09017 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXC4P09017 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC4P09017 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC4P09017 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC4P09017 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC4P09017 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC4P09017 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXC4P09017 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC4P09017 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC4P09017 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 U8.11-201ENST00000384699 133 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 U8.12-201ENST00000384701 133 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXC4P09017 RNU6-564P-201ENST00000410983 104 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 RAB9AP3-201ENST00000412737 573 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
HOXC4P09017 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC4P09017 TCEA1P2-201ENST00000420496 906 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC4P09017 AC011742.1-201ENST00000431448 434 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AC096638.2-201ENST00000434965 711 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 SDR42E1P3-201ENST00000438345 502 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 RPS17P13-201ENST00000448974 407 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 RAB9AP1-201ENST00000449393 573 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 IFNWP4-201ENST00000453148 294 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC4P09017 U8.18-201ENST00000459285 133 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AC091564.1-201ENST00000464563 479 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 RPL23AP71-201ENST00000470966 469 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC4P09017 PANCR-201ENST00000503456 493 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 IGKV2D-23-201ENST00000518179 286 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC4P09017 IGHV3-32-201ENST00000519182 355 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC4P09017 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 AC019227.1-201ENST00000526902 510 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC4P09017 AC092851.1-201ENST00000535964 478 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 AC084757.1-201ENST00000559987 490 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AC092868.3-201ENST00000560515 784 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC4P09017 VN1R79P-201ENST00000593540 513 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AC007423.1-201ENST00000605009 627 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AC144521.1-201ENST00000607148 956 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC4P09017 AC012442.3-202ENST00000636742 206 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 OR8B1P-202ENST00000641132 1178 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 UBE3AP2-201ENST00000429033 2259 ntBASIC3.78□□□□□ -1.8
HOXC4P09017 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HOXC4P09017 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC4P09017 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC4P09017 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXC4P09017 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXC4P09017 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXC4P09017 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXC4P09017 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC4P09017 MIR200C-201ENST00000384980 68 ntBASIC3.77□□□□□ -1.81
HOXC4P09017 MIR92A2-201ENST00000385299 75 ntBASIC3.77□□□□□ -1.81
HOXC4P09017 ATP5F1P3-201ENST00000397213 657 ntBASIC3.77□□□□□ -1.81
HOXC4P09017 RPL26P37-201ENST00000411983 438 ntBASIC3.77□□□□□ -1.81
HOXC4P09017 AC013410.2-201ENST00000422627 201 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms