Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NDUFB4P9-201ENST00000511646 388 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC3.78□□□□□ -1.8
SHOX2O60902 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC3.78□□□□□ -1.8
SHOX2O60902 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC3.78□□□□□ -1.8
SHOX2O60902 AC093331.1-201ENST00000521474 169 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.78□□□□□ -1.8
SHOX2O60902 AC025857.1-201ENST00000525252 377 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC3.78□□□□□ -1.8
SHOX2O60902 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.78□□□□□ -1.8
SHOX2O60902 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.78□□□□□ -1.8
SHOX2O60902 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.78□□□□□ -1.8
SHOX2O60902 AC106785.1-201ENST00000565935 262 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.78□□□□□ -1.8
SHOX2O60902 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.78□□□□□ -1.8
SHOX2O60902 FAM60CP-201ENST00000591086 664 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 VN1R85P-201ENST00000601587 426 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 AC103710.3-201ENST00000608157 948 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.78□□□□□ -1.8
SHOX2O60902 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.78□□□□□ -1.8
SHOX2O60902 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SHOX2O60902 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SHOX2O60902 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SHOX2O60902 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.78□□□□□ -1.8
SHOX2O60902 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SHOX2O60902 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.81
SHOX2O60902 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.81
SHOX2O60902 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SHOX2O60902 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHOX2O60902 AL118496.1-201ENST00000440201 1812 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.77□□□□□ -1.81
SHOX2O60902 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
SHOX2O60902 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHOX2O60902 XIAPP3-201ENST00000312918 795 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHOX2O60902 RNU1-132P-201ENST00000364300 164 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.77□□□□□ -1.81
SHOX2O60902 RN7SKP222-201ENST00000410651 315 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AC126124.2-201ENST00000413542 321 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AC017079.2-201ENST00000416102 485 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AL138785.1-201ENST00000425821 331 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AC073069.1-201ENST00000428657 441 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 OR6C71P-201ENST00000432580 913 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.77□□□□□ -1.81
SHOX2O60902 SNORA71B-202ENST00000439232 272 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 CBX1P1-201ENST00000440184 427 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 RPS3AP46-201ENST00000448352 682 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 RPS11P1-201ENST00000451072 473 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AC008481.1-201ENST00000463278 396 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.77□□□□□ -1.81
SHOX2O60902 AC108941.1-201ENST00000502853 530 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
SHOX2O60902 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.77□□□□□ -1.81
SHOX2O60902 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.77□□□□□ -1.81
SHOX2O60902 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC3.77□□□□□ -1.81
SHOX2O60902 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.77□□□□□ -1.81
SHOX2O60902 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.77□□□□□ -1.81
SHOX2O60902 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.77□□□□□ -1.81
SHOX2O60902 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC3.77□□□□□ -1.81
SHOX2O60902 MIR4444-1-201ENST00000581696 74 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 MIR4715-201ENST00000584117 79 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 MIR4444-2-201ENST00000584390 74 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AC110743.1-201ENST00000584870 478 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AC011477.5-201ENST00000586571 259 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.77□□□□□ -1.81
SHOX2O60902 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.77□□□□□ -1.81
SHOX2O60902 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SHOX2O60902 AL590410.1-201ENST00000617925 333 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.77□□□□□ -1.81
SHOX2O60902 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHOX2O60902 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
SHOX2O60902 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHOX2O60902 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SHOX2O60902 AC139713.2-214ENST00000642059 1811 ntBASIC3.77□□□□□ -1.81
SHOX2O60902 AC123912.3-201ENST00000600907 1367 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.76□□□□□ -1.81
SHOX2O60902 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
SHOX2O60902 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
SHOX2O60902 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SHOX2O60902 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
SHOX2O60902 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SHOX2O60902 RNA5SP235-201ENST00000365411 114 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.76□□□□□ -1.81
SHOX2O60902 HSPE1P12-201ENST00000412576 301 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 AL590806.1-201ENST00000415818 853 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC3.76□□□□□ -1.81
SHOX2O60902 AC073464.3-201ENST00000422564 712 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.76□□□□□ -1.81
SHOX2O60902 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.76□□□□□ -1.81
SHOX2O60902 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.76□□□□□ -1.81
SHOX2O60902 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.76□□□□□ -1.81
SHOX2O60902 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.76□□□□□ -1.81
SHOX2O60902 AL358232.1-201ENST00000448030 501 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 FCF1P7-201ENST00000451185 558 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 RPL38P1-201ENST00000460914 211 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 AL132838.2-201ENST00000492041 314 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.76□□□□□ -1.81
SHOX2O60902 AP000926.3-201ENST00000497201 299 ntBASIC3.76□□□□□ -1.81
SHOX2O60902 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.76□□□□□ -1.81
SHOX2O60902 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms