Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 TRAV8-5-201ENST00000537369 341 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 AC007424.1-203ENST00000554613 687 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 AC124068.1-201ENST00000563131 678 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 MIR4444-1-201ENST00000581696 74 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 MIR4444-2-201ENST00000584390 74 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 BPIFA4P-203ENST00000603168 689 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 IMMP1LP1-201ENST00000605170 488 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 AC020634.1-201ENST00000608701 549 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 AC018926.1-201ENST00000616335 435 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 AL356863.1-201ENST00000623378 1080 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 CASC19-206ENST00000641028 1430 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 AC073055.1-201ENST00000456901 1621 ntBASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHGA1Q9Y5H4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 DHX9P1-201ENST00000436565 3076 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 XIAPP3-201ENST00000312918 795 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RNA5SP513-201ENST00000364648 118 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 SNORA62.3-201ENST00000365110 153 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RNA5SP171-201ENST00000391071 115 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AL356095.1-201ENST00000417217 199 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 BTF3P10-201ENST00000433415 495 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 NMNAT1P2-201ENST00000435192 860 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 VN1R34P-201ENST00000447387 883 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC012671.1-201ENST00000451912 203 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RN7SL132P-201ENST00000478131 296 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RN7SL812P-201ENST00000493791 279 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC112198.4-201ENST00000515450 351 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RNU6-488P-201ENST00000515918 99 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RNU5A-7P-201ENST00000515979 116 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AP003355.1-201ENST00000518956 587 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC011611.5-201ENST00000552477 578 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC006116.5-201ENST00000591936 559 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RNA5SP108-201ENST00000605921 117 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC022079.2-201ENST00000619739 566 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 MIR6075-201ENST00000620782 95 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AL158163.1-201ENST00000603915 1649 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AL356489.2-201ENST00000566968 3528 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 AC139713.2-215ENST00000641428 5037 ntBASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PCDHGA1Q9Y5H4 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 AL136520.1-201ENST00000600311 1322 ntBASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 RNA5SP502-201ENST00000362694 119 ntBASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 SNORA70E-201ENST00000384492 135 ntBASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 RPL22P22-201ENST00000395439 379 ntBASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 AL161909.1-201ENST00000397390 712 ntBASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 AC009237.10-201ENST00000414112 510 ntBASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA1Q9Y5H4 AL117339.2-201ENST00000430475 180 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms