Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNA5SP234-201ENST00000363916 119 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC211486.3-201ENST00000412694 621 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 GNG5P5-201ENST00000420444 220 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 RPS26P47-201ENST00000427219 348 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC104651.1-201ENST00000427559 735 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 BX276092.6-201ENST00000430476 250 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC105402.2-201ENST00000438503 358 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 LSM1P1-201ENST00000438629 273 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 MTND1P1-201ENST00000445453 368 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AZGP1P2-201ENST00000454506 345 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 BX276092.8-201ENST00000455722 250 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 KLF3P2-201ENST00000465138 268 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC010683.1-201ENST00000473673 378 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 SIAH1P1-201ENST00000479411 923 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 RN7SL547P-201ENST00000490793 290 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC108064.1-201ENST00000513791 460 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 BX510359.5-201ENST00000515651 304 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC104986.1-201ENST00000517978 436 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 IGKV2-18-201ENST00000522607 343 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AP002748.2-201ENST00000528671 348 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC009063.1-201ENST00000563342 702 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 MIR3176-201ENST00000582210 90 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC015871.2-201ENST00000603605 948 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC093765.1-201ENST00000603758 881 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC131902.3-201ENST00000611767 581 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 WT1-AS_8.1-201ENST00000615200 275 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AL603839.4-201ENST00000624658 1005 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC114774.1-201ENST00000507410 1770 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 GDI2P1-201ENST00000429312 1336 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC005832.2-201ENST00000538921 1430 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 RNY4P24-201ENST00000362735 96 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 Y_RNA.582-201ENST00000391023 95 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 SSXP10-201ENST00000402595 565 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AL024474.1-201ENST00000404655 591 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC069218.2-201ENST00000411665 344 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 EIF1P1-201ENST00000421436 341 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AL356583.2-201ENST00000426536 280 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 HMGN2P27-201ENST00000427352 270 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC109583.1-201ENST00000432156 268 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AL353597.2-202ENST00000434901 373 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 RPL5P25-201ENST00000441148 775 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 LINC02210-201ENST00000444561 288 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC105399.1-202ENST00000447303 205 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 HIGD1AP8-201ENST00000453927 274 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 OR6K1P-201ENST00000456766 971 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC074386.1-201ENST00000476560 767 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC126182.1-201ENST00000478134 357 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC090453.1-201ENST00000495560 436 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 AC104057.1-201ENST00000515547 497 ntBASIC5.43□□□□□ -1.54
TRIM39Q9HCM9 RNU6-1178P-201ENST00000516674 107 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms