Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD1Q96NR3 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD1Q96NR3 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.45□□□□□ -1.54
PTCHD1Q96NR3 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC093671.1-201ENST00000624981 2929 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 SNORD56.2-201ENST00000363242 71 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 Y_RNA.279-201ENST00000364763 95 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AL603766.1-201ENST00000407763 664 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AL357752.1-201ENST00000412817 349 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC133104.1-201ENST00000429100 218 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 HMGB3P24-201ENST00000433260 622 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 PPIAP13-201ENST00000434706 478 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC096775.1-201ENST00000437724 448 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 CBX1P1-201ENST00000440184 427 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC132479.1-201ENST00000449160 144 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC022364.2-201ENST00000457963 554 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC006539.1-201ENST00000481419 501 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 TMEM251P1-201ENST00000503717 318 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 NDUFA5P12-201ENST00000503796 343 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 EIF4A2P5-201ENST00000529914 499 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 HSPE1P3-201ENST00000559254 309 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 MIR4675-201ENST00000577898 77 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 MIR3614-201ENST00000581261 86 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AL161734.1-201ENST00000609720 557 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC078899.5-201ENST00000612475 178 ntBASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD1Q96NR3 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 RBPJP2-201ENST00000618187 1444 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 Y_RNA.356-201ENST00000365475 113 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 RNA5SP122-201ENST00000384457 108 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 RNU6-952P-201ENST00000391164 108 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AL031985.1-201ENST00000392713 418 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 RPL31P1-201ENST00000398116 372 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 RPS20P2-201ENST00000402520 389 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AL049693.1-201ENST00000402760 611 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 ARL4AP5-201ENST00000404372 599 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 MTND6P12-201ENST00000428247 522 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 RPL36AP39-201ENST00000445859 318 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 RPL23AP20-201ENST00000447965 421 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 FDX1P2-201ENST00000450769 375 ntBASIC5.43□□□□□ -1.54
PTCHD1Q96NR3 AL645937.3-201ENST00000453647 936 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms