Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC126389.1-201ENST00000477436 290 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RPS27P20-201ENST00000492051 246 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 NIPA2P2-201ENST00000496376 1083 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 SNORA70.11-201ENST00000515987 138 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 SNORA70.13-201ENST00000516116 138 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RNU7-51P-201ENST00000516560 62 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 FAM60DP-201ENST00000524174 632 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 SETP7-201ENST00000552169 453 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC009120.3-201ENST00000563335 499 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 MIR3157-201ENST00000578688 85 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AL355812.1-201ENST00000603215 216 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC007497.1-201ENST00000610421 561 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AL132765.2-201ENST00000610812 351 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RMST_7.1-201ENST00000621935 268 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC010401.2-201ENST00000575137 4934 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 ERG-202ENST00000398897 4651 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 SAGE2P-201ENST00000420011 2126 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 MTCO1P9-201ENST00000505577 1534 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RNA5SP478-201ENST00000364657 115 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RN7SKP186-201ENST00000365371 303 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC019155.1-201ENST00000382242 574 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RNU6-432P-201ENST00000384196 109 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 MIR454-201ENST00000390180 115 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RN7SKP159-201ENST00000410657 292 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 Y_RNA.615-201ENST00000410769 117 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RNA5SP115-201ENST00000411160 107 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RPS20P15-201ENST00000412792 311 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC092447.6-201ENST00000414578 210 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC009161.1-201ENST00000417306 376 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RPL21P50-201ENST00000417698 477 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 CYP4F30P-202ENST00000420048 405 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 CHIAP3-201ENST00000423668 1133 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 SAGE4P-201ENST00000442271 3381 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 MRPL50P4-201ENST00000446432 475 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 COX4I1P2-201ENST00000447446 547 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RPS17P13-201ENST00000448974 407 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC092967.1-201ENST00000449016 481 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 MTND3P16-201ENST00000452205 344 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 HMGB3P21-201ENST00000452483 547 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 MTND1P9-201ENST00000453775 944 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 YRDCP3-201ENST00000456507 480 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RN7SL39P-201ENST00000462264 297 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RN7SL714P-201ENST00000487050 298 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 RPL38P4-201ENST00000502376 214 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC116562.3-201ENST00000506136 177 ntBASIC4.93□□□□□ -1.62
CCDC140Q96MF4 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC140Q96MF4 AC112206.3-201ENST00000514578 389 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms