Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AL157702.1-201ENST00000398764 426 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
HLA-CQ95604 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
HLA-CQ95604 RNU6-101P-201ENST00000410323 104 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 HMGN1P24-201ENST00000412282 298 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HLA-CQ95604 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC6.89□□□□□ -1.31
HLA-CQ95604 AC048351.1-201ENST00000420064 602 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC6.89□□□□□ -1.31
HLA-CQ95604 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC6.89□□□□□ -1.31
HLA-CQ95604 AC094019.1-201ENST00000434678 472 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.89□□□□□ -1.31
HLA-CQ95604 AC005229.2-201ENST00000456995 399 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AC006967.1-201ENST00000467608 589 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.89□□□□□ -1.31
HLA-CQ95604 ATP5LP3-201ENST00000514223 304 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 OR4P1P-201ENST00000530808 1136 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC6.89□□□□□ -1.31
HLA-CQ95604 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.89□□□□□ -1.31
HLA-CQ95604 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.89□□□□□ -1.31
HLA-CQ95604 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.89□□□□□ -1.31
HLA-CQ95604 AC012603.1-201ENST00000606424 528 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AL355810.1-201ENST00000614629 552 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AL445363.3-201ENST00000623080 671 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AC138627.2-201ENST00000624202 601 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AL353662.3-201ENST00000625131 237 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AC073488.9-201ENST00000631601 754 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 AC073488.3-201ENST00000631611 778 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.89□□□□□ -1.31
HLA-CQ95604 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
HLA-CQ95604 HSPA8P14-201ENST00000552265 1805 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.89□□□□□ -1.31
HLA-CQ95604 AC027088.4-201ENST00000611559 1947 ntBASIC6.89□□□□□ -1.31
HLA-CQ95604 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HLA-CQ95604 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HLA-CQ95604 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC6.89□□□□□ -1.31
HLA-CQ95604 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC6.89□□□□□ -1.31
HLA-CQ95604 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
HLA-CQ95604 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 AC034111.1-201ENST00000562143 3770 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.88□□□□□ -1.31
HLA-CQ95604 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC6.88□□□□□ -1.31
HLA-CQ95604 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.88□□□□□ -1.31
HLA-CQ95604 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC6.88□□□□□ -1.31
HLA-CQ95604 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC6.88□□□□□ -1.31
HLA-CQ95604 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC6.88□□□□□ -1.31
HLA-CQ95604 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
HLA-CQ95604 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.88□□□□□ -1.31
HLA-CQ95604 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC6.88□□□□□ -1.31
HLA-CQ95604 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.88□□□□□ -1.31
HLA-CQ95604 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 Y_RNA.288-201ENST00000364854 92 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 MIR105-2-201ENST00000385083 81 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 NDUFS5P1-201ENST00000405668 289 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 RN7SKP286-201ENST00000410894 299 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 GSTM3P2-201ENST00000412746 530 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC6.88□□□□□ -1.31
HLA-CQ95604 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.88□□□□□ -1.31
HLA-CQ95604 RSL24D1P6-201ENST00000426934 401 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 AC239367.3-201ENST00000428996 814 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 AC019185.1-201ENST00000442718 389 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 AC079922.1-201ENST00000443291 359 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.88□□□□□ -1.31
HLA-CQ95604 AL162388.1-201ENST00000450912 352 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC6.88□□□□□ -1.31
HLA-CQ95604 RPS20P21-201ENST00000466859 343 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 HIGD1AP13-201ENST00000509878 289 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 SNORD116.3-201ENST00000517176 78 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 IGLV2-28-201ENST00000520681 304 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 AP006245.2-201ENST00000522004 300 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC6.88□□□□□ -1.31
HLA-CQ95604 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC6.88□□□□□ -1.31
HLA-CQ95604 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.88□□□□□ -1.31
HLA-CQ95604 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.88□□□□□ -1.31
HLA-CQ95604 MIR4700-201ENST00000578311 74 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 SNORD95-201ENST00000579879 68 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 MIR1273E-201ENST00000581165 102 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 AL354984.3-201ENST00000604803 325 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 SNORA74.4-201ENST00000607595 199 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 AC092608.2-201ENST00000624427 218 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 CR392039.4-201ENST00000624968 501 ntBASIC6.88□□□□□ -1.31
HLA-CQ95604 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC6.88□□□□□ -1.31
HLA-CQ95604 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 LINC02209-201ENST00000521245 2651 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.88□□□□□ -1.31
HLA-CQ95604 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.88□□□□□ -1.31
HLA-CQ95604 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms