Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC010468.3-201ENST00000508225 458 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC108064.1-201ENST00000513791 460 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC099522.1-202ENST00000514718 367 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 SNORA76.2-201ENST00000517095 137 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 SERPINE4P-201ENST00000554978 281 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 RPL23AP97-201ENST00000568955 471 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC006116.5-201ENST00000591936 559 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC090912.3-201ENST00000609775 533 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC091948.2-201ENST00000636510 279 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 NMD3P1-201ENST00000439704 1488 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC046144.1-201ENST00000478559 1853 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 ENSAP3-201ENST00000312710 333 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 RNU6-543P-201ENST00000362576 108 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 RNU1-20P-201ENST00000363314 162 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 Y_RNA.333-201ENST00000365274 102 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 PRRC2CP1-201ENST00000404428 159 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 MIR1911-201ENST00000410783 80 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC093422.3-201ENST00000428506 305 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 RPL23AP83-201ENST00000434984 473 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AL035407.2-201ENST00000454090 378 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 MTND2P30-201ENST00000456663 382 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 RPL7L1P8-201ENST00000469911 741 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 TPT1P3-201ENST00000492841 512 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC083923.1-201ENST00000523708 376 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 CENPUP2-201ENST00000555897 1186 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC124068.1-201ENST00000563131 678 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 RPL7P50-201ENST00000600588 727 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 OR2BH1P-201ENST00000608850 864 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AL356121.2-201ENST00000624715 780 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 AC017104.5-201ENST00000637647 639 ntBASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.27□□□□□ -1.73
HDDC3Q8N4P3 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 DCAF13P1-201ENST00000495256 1330 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 NSRP1P1-201ENST00000444067 1693 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 RNA5SP130-201ENST00000364431 114 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 RNU6-356P-201ENST00000384140 107 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 SNORA51.12-201ENST00000384448 134 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 RNU6-796P-201ENST00000391086 107 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 ATF1P1-201ENST00000406040 927 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 RN7SKP33-201ENST00000410942 340 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 CRYBB2P1-203ENST00000415709 538 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 OR5AW1P-201ENST00000426334 1006 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 BTBD7P2-201ENST00000441962 620 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AL500527.1-201ENST00000448532 255 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms