Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 AC007224.1-201ENST00000564410 144 ntBASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 MIR3667-201ENST00000581025 74 ntBASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 AP001180.3-201ENST00000582221 145 ntBASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 AC015804.1-201ENST00000622935 435 ntBASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 AC005858.4-201ENST00000623191 700 ntBASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 CDRT1-208ENST00000630868 794 ntBASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 OR8B1P-202ENST00000641132 1178 ntBASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PDLIM3Q53GG5 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC009643.2-201ENST00000603543 1448 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 PAICSP7-201ENST00000419829 962 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 RPS27AP7-201ENST00000422792 455 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 CENPIP1-201ENST00000425713 902 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 HMGB3P5-201ENST00000428894 612 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC023347.2-201ENST00000433994 462 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 RPS26P40-201ENST00000435209 294 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC073052.1-201ENST00000440417 714 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC112492.1-201ENST00000449607 712 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 RPL23AP15-201ENST00000450202 459 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC108751.2-201ENST00000469993 231 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC020593.1-201ENST00000507399 299 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC234772.3-201ENST00000602277 528 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC098935.2-201ENST00000604222 466 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 IMMP1LP1-201ENST00000605170 488 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AP005137.2-201ENST00000609238 400 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC005962.2-201ENST00000611427 652 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AC024257.5-201ENST00000612739 531 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 AL049794.2-201ENST00000616301 365 ntBASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PDLIM3Q53GG5 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 AC046144.1-201ENST00000478559 1853 ntBASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 RNU6-636P-201ENST00000384598 107 ntBASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 SNORA66-201ENST00000384792 133 ntBASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 MIR124-3-201ENST00000384866 87 ntBASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 MTCO1P56-201ENST00000401674 224 ntBASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 AL592291.1-201ENST00000403830 352 ntBASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 AL445189.1-201ENST00000405722 338 ntBASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 GLS-204ENST00000409428 816 ntTSL 2 BASIC3.97□□□□□ -1.77
PDLIM3Q53GG5 RN7SKP199-201ENST00000410325 305 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms