Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC114814.2-201ENST00000419195 485 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXF1Q12946 AL353597.2-202ENST00000434901 373 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 S100A11P1-201ENST00000477525 312 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXF1Q12946 AL133372.1-201ENST00000493565 745 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 SAP18P1-201ENST00000512058 390 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXF1Q12946 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXF1Q12946 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXF1Q12946 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
FOXF1Q12946 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXF1Q12946 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXF1Q12946 AC073073.2-201ENST00000609827 2578 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 CEP170P1-201ENST00000502249 4587 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXF1Q12946 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXF1Q12946 AC090337.1-201ENST00000579651 2074 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXF1Q12946 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXF1Q12946 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXF1Q12946 RNU1-87P-201ENST00000363727 170 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 SNORA62.3-201ENST00000365110 153 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXF1Q12946 AC127526.1-201ENST00000417526 366 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXF1Q12946 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXF1Q12946 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.25□□□□□ -1.89
FOXF1Q12946 AP000936.3-201ENST00000438127 255 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 EXTL2P1-201ENST00000446218 416 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 AC099063.2-201ENST00000446360 662 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 NDUFS5P3-201ENST00000450668 321 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 AL133244.1-201ENST00000456007 258 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 RPL23AP12-201ENST00000467573 473 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXF1Q12946 FTH1P24-201ENST00000503502 462 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
FOXF1Q12946 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXF1Q12946 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXF1Q12946 OR5AP1P-201ENST00000529730 940 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 AGGF1P8-201ENST00000562979 1000 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 MTND2P13-201ENST00000577438 1039 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC3.25□□□□□ -1.89
FOXF1Q12946 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXF1Q12946 AL354950.1-201ENST00000614150 568 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 uc_338.32-201ENST00000615087 172 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 AC069209.1-201ENST00000619282 651 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 AC012442.3-202ENST00000636742 206 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXF1Q12946 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXF1Q12946 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXF1Q12946 HSPA8P17-201ENST00000427029 1382 ntBASIC3.25□□□□□ -1.89
FOXF1Q12946 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
FOXF1Q12946 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
FOXF1Q12946 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXF1Q12946 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXF1Q12946 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXF1Q12946 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
FOXF1Q12946 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXF1Q12946 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXF1Q12946 DBIP2-201ENST00000419076 262 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 MRPS18BP2-201ENST00000434310 759 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 RPS20P1-201ENST00000434853 354 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AC022431.1-201ENST00000450941 438 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 EIF4A1P11-201ENST00000451239 222 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXF1Q12946 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXF1Q12946 AC073387.1-201ENST00000453261 709 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 ANP32BP2-201ENST00000454525 545 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 RPL7P15-201ENST00000461190 712 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AC068305.1-201ENST00000497406 726 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXF1Q12946 AC021146.1-201ENST00000511202 716 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXF1Q12946 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXF1Q12946 PAICSP4-201ENST00000517543 1253 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXF1Q12946 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXF1Q12946 DEFB109D-201ENST00000529497 240 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AC135001.1-201ENST00000544546 283 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AL121576.1-201ENST00000556055 276 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 HNRNPCP4-201ENST00000571636 900 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXF1Q12946 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXF1Q12946 AC010591.1-201ENST00000603941 649 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AC034229.5-201ENST00000624258 185 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AL034408.1-202ENST00000636088 415 ntBASIC3.24□□□□□ -1.89
FOXF1Q12946 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXF1Q12946 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
FOXF1Q12946 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXF1Q12946 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXF1Q12946 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXF1Q12946 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXF1Q12946 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXF1Q12946 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXF1Q12946 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXF1Q12946 RN7SKP44-201ENST00000363602 316 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 RNA5SP42-201ENST00000364278 115 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 363 ms