Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RPS3AP46-201ENST00000448352 682 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 S100A11P1-201ENST00000477525 312 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 UBE2CP3-201ENST00000502715 450 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA1P55317 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA1P55317 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.41□□□□□ -1.86
FOXA1P55317 RN7SKP60-201ENST00000516985 239 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 RANP9-201ENST00000519957 271 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA1P55317 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA1P55317 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA1P55317 AC067852.3-201ENST00000589177 561 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 AL049634.3-201ENST00000604968 457 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 U4.6-201ENST00000621618 127 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA1P55317 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA1P55317 AC022893.2-201ENST00000564832 3296 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
FOXA1P55317 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
FOXA1P55317 SNORD9-201ENST00000362566 104 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA1P55317 RN7SKP285-201ENST00000410137 318 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 RNU6-55P-201ENST00000411092 107 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 RNU6-954P-201ENST00000411355 107 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXA1P55317 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA1P55317 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA1P55317 HMGB3P10-201ENST00000434734 572 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 RPS20P1-201ENST00000434853 354 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 AL353597.2-202ENST00000434901 373 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 AL357552.1-201ENST00000445254 415 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA1P55317 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA1P55317 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXA1P55317 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA1P55317 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC3.4□□□□□ -1.87
FOXA1P55317 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
FOXA1P55317 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA1P55317 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.4□□□□□ -1.87
FOXA1P55317 AC084824.1-201ENST00000550917 1005 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 AC007424.1-203ENST00000554613 687 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA1P55317 HNRNPCP4-201ENST00000571636 900 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 AC107982.3-201ENST00000584957 985 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXA1P55317 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.4□□□□□ -1.87
FOXA1P55317 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
FOXA1P55317 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA1P55317 AL451142.2-201ENST00000429076 2090 ntBASIC3.4□□□□□ -1.87
FOXA1P55317 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA1P55317 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA1P55317 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA1P55317 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA1P55317 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA1P55317 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
FOXA1P55317 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
FOXA1P55317 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA1P55317 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA1P55317 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA1P55317 RNU6-1279P-201ENST00000383917 103 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
FOXA1P55317 SNORA57.1-201ENST00000391227 145 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 RN7SKP263-201ENST00000411194 309 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA1P55317 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.39□□□□□ -1.87
FOXA1P55317 MTND6P32-201ENST00000457611 483 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 RPS4XP2-201ENST00000458402 793 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 AC010401.1-201ENST00000463867 348 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 RNU6-1231P-201ENST00000517185 103 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA1P55317 IGHV3-32-201ENST00000519182 355 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 AP000926.4-201ENST00000527351 454 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA1P55317 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.39□□□□□ -1.87
FOXA1P55317 AC106785.3-201ENST00000564064 847 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 MIR1254-2-201ENST00000579553 63 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXA1P55317 AC022916.3-201ENST00000592961 742 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 AL109618.2-201ENST00000605527 211 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA1P55317 NF1P10-201ENST00000613227 742 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 AC069209.1-201ENST00000619282 651 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXA1P55317 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA1P55317 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
FOXA1P55317 SPATA2P1-201ENST00000431223 2055 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 AC058791.1-201ENST00000608412 3198 ntBASIC3.39□□□□□ -1.87
FOXA1P55317 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms