Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AF186190.1-201ENST00000517470 480 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC022790.1-201ENST00000522872 204 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC113192.3-201ENST00000529152 742 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 RPL23AP87-202ENST00000573039 466 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC090079.2-201ENST00000575289 768 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC090312.2-201ENST00000582687 378 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC133552.5-201ENST00000604266 540 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC090246.1-201ENST00000616499 426 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 AC023509.5-201ENST00000617434 807 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 FRG1HP-204ENST00000617940 757 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 AL590396.2-201ENST00000636511 1041 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TNFRSF4P43489 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TNFRSF4P43489 MTCO1P4-201ENST00000520516 1409 ntBASIC4.11□□□□□ -1.75
TNFRSF4P43489 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TNFRSF4P43489 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TNFRSF4P43489 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
TNFRSF4P43489 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 RNU2-65P-201ENST00000410162 185 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 RPS23P10-201ENST00000416185 486 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 UBE2D3P3-201ENST00000426992 425 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 AL445584.1-201ENST00000431451 330 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 AL050321.1-201ENST00000432363 400 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AL358232.1-201ENST00000448030 501 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 AL500522.2-201ENST00000448562 343 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC104108.1-201ENST00000509930 412 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 KRT19P6-201ENST00000510983 209 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 RNU7-143P-201ENST00000516781 65 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 RNA5SP143-201ENST00000516936 115 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 C1DP5-201ENST00000525775 383 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AP003717.3-201ENST00000544832 1180 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 CYCSP30-201ENST00000546447 172 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 HMGB3P26-201ENST00000560051 582 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 ATP5F1P7-201ENST00000567330 760 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC098483.2-201ENST00000603158 454 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC114878.2-201ENST00000604863 1251 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC095038.2-201ENST00000621464 1070 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC112200.1-201ENST00000625015 234 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
TNFRSF4P43489 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
TNFRSF4P43489 AC092435.4-201ENST00000623012 4159 ntBASIC4.1□□□□□ -1.75
TNFRSF4P43489 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
TNFRSF4P43489 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC106871.1-201ENST00000568324 3102 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AL445183.3-201ENST00000414168 502 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 PRELID3BP10-201ENST00000431957 584 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 TBCAP1-201ENST00000436520 327 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
TNFRSF4P43489 RPL7P31-201ENST00000450192 724 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 RPS11P1-201ENST00000451072 473 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms