Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.32□□□□□ -1.72
BRCA1P38398 AC073657.2-201ENST00000605661 303 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 ATP5A1P2-202ENST00000616464 443 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.32□□□□□ -1.72
BRCA1P38398 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC4.32□□□□□ -1.72
BRCA1P38398 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
BRCA1P38398 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
BRCA1P38398 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
BRCA1P38398 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
BRCA1P38398 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
BRCA1P38398 AC093775.1-201ENST00000624154 1868 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
BRCA1P38398 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
BRCA1P38398 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
BRCA1P38398 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
BRCA1P38398 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
BRCA1P38398 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
BRCA1P38398 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.31□□□□□ -1.72
BRCA1P38398 AC107083.1-201ENST00000439643 279 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.31□□□□□ -1.72
BRCA1P38398 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.31□□□□□ -1.72
BRCA1P38398 UBA52P3-201ENST00000491303 382 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 TCP11X3P-202ENST00000514289 1254 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.31□□□□□ -1.72
BRCA1P38398 UBTFL9-201ENST00000534504 1148 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.31□□□□□ -1.72
BRCA1P38398 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.31□□□□□ -1.72
BRCA1P38398 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.31□□□□□ -1.72
BRCA1P38398 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.31□□□□□ -1.72
BRCA1P38398 AL451007.1-201ENST00000595491 289 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 MIR7851-201ENST00000610611 160 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 MIR6715A-201ENST00000615929 79 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.31□□□□□ -1.72
BRCA1P38398 BMS1P21-201ENST00000634565 365 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.31□□□□□ -1.72
BRCA1P38398 ZNF90P1-201ENST00000480493 1951 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.31□□□□□ -1.72
BRCA1P38398 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.31□□□□□ -1.72
BRCA1P38398 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
BRCA1P38398 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
BRCA1P38398 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.3□□□□□ -1.72
BRCA1P38398 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BRCA1P38398 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.3□□□□□ -1.72
BRCA1P38398 AL591623.2-201ENST00000449978 222 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 AC233982.1-201ENST00000451247 436 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BRCA1P38398 FCF1P8-201ENST00000510322 597 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.3□□□□□ -1.72
BRCA1P38398 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
BRCA1P38398 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC4.3□□□□□ -1.72
BRCA1P38398 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.3□□□□□ -1.72
BRCA1P38398 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
BRCA1P38398 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.3□□□□□ -1.72
BRCA1P38398 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.3□□□□□ -1.72
BRCA1P38398 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.3□□□□□ -1.72
BRCA1P38398 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
BRCA1P38398 MIR137-201ENST00000385223 102 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 U3.39-201ENST00000408569 239 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 AC063979.1-201ENST00000415539 377 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.3□□□□□ -1.72
BRCA1P38398 OR1AA1P-201ENST00000419597 916 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 AL158071.1-201ENST00000430315 461 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 AL513175.1-201ENST00000431492 780 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 RPL7P48-201ENST00000461513 746 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 RPL21P6-201ENST00000479171 504 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.3□□□□□ -1.72
BRCA1P38398 AL358913.1-201ENST00000554342 121 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.3□□□□□ -1.72
BRCA1P38398 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.3□□□□□ -1.72
BRCA1P38398 AP003355.3-201ENST00000623465 114 ntBASIC4.3□□□□□ -1.72
BRCA1P38398 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
BRCA1P38398 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BRCA1P38398 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BRCA1P38398 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BRCA1P38398 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BRCA1P38398 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
BRCA1P38398 AC093698.1-201ENST00000423843 571 ntBASIC4.29□□□□□ -1.72
BRCA1P38398 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC4.29□□□□□ -1.72
BRCA1P38398 VN1R40P-201ENST00000455196 941 ntBASIC4.29□□□□□ -1.72
BRCA1P38398 AP000942.1-201ENST00000463969 747 ntBASIC4.29□□□□□ -1.72
BRCA1P38398 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.29□□□□□ -1.72
BRCA1P38398 OR5AC4P-202ENST00000642086 985 ntBASIC4.29□□□□□ -1.72
BRCA1P38398 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BRCA1P38398 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BRCA1P38398 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
BRCA1P38398 AC019072.1-201ENST00000604535 1551 ntBASIC4.29□□□□□ -1.72
BRCA1P38398 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
BRCA1P38398 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.29□□□□□ -1.72
BRCA1P38398 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
BRCA1P38398 SRP72P2-201ENST00000344851 1979 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 RNA5SP52-201ENST00000362448 134 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
BRCA1P38398 RPS24P12-201ENST00000402084 394 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AL034379.1-201ENST00000423216 253 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.28□□□□□ -1.72
BRCA1P38398 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC4.28□□□□□ -1.72
BRCA1P38398 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.28□□□□□ -1.72
BRCA1P38398 PTP4A1P3-201ENST00000433661 420 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 HMGB3P10-201ENST00000434734 572 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms