Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 COL6A4P2-205ENST00000509855 506 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 AC093853.1-201ENST00000515689 483 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 AC067904.2-201ENST00000517322 1283 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 HMGB1P23-201ENST00000518743 568 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC4P09017 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXC4P09017 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXC4P09017 AC090079.2-201ENST00000575289 768 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 AC087499.8-201ENST00000578406 226 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 MIR5187-201ENST00000583479 76 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 AC015911.5-201ENST00000587076 451 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXC4P09017 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXC4P09017 AP000255.1-201ENST00000610276 676 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 AC006133.1-201ENST00000617106 264 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 AC039056.2-201ENST00000622261 511 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 AC073530.2-201ENST00000623987 261 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 AL356094.1-201ENST00000624663 1212 ntBASIC3.81□□□□□ -1.8
HOXC4P09017 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.81□□□□□ -1.8
HOXC4P09017 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.81□□□□□ -1.8
HOXC4P09017 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXC4P09017 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXC4P09017 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXC4P09017 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXC4P09017 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.81□□□□□ -1.8
HOXC4P09017 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC4P09017 FAM35DP-201ENST00000323387 2712 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC4P09017 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 AL122126.1-201ENST00000546905 1318 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC4P09017 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HOXC4P09017 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HOXC4P09017 RNU6-819P-201ENST00000364116 107 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 RNU6-532P-201ENST00000384318 107 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HOXC4P09017 GSTA12P-201ENST00000402398 508 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AL138878.1-201ENST00000405131 347 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 RNA5SP239-201ENST00000410218 129 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC4P09017 AL356806.1-201ENST00000422524 916 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 NPM1P34-201ENST00000428821 893 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AL445584.1-201ENST00000431451 330 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 Z74696.2-201ENST00000436514 498 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC044797.1-201ENST00000445744 679 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC4P09017 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 MTND2P39-201ENST00000457230 764 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AL133162.1-201ENST00000463228 453 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC108941.1-201ENST00000502853 530 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXC4P09017 SNORA70.17-201ENST00000516449 133 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 MIR2114-201ENST00000516645 80 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 RNU6-347P-201ENST00000516658 105 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 OR4V1P-201ENST00000525394 1140 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC020914.4-201ENST00000597690 277 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 AP004372.1-201ENST00000604842 844 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 KATNBL1P1-201ENST00000605192 748 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AC110741.2-201ENST00000605278 268 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 AC005972.3-201ENST00000606304 481 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC128687.2-201ENST00000609657 566 ntBASIC3.8□□□□□ -1.8
HOXC4P09017 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HOXC4P09017 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC4P09017 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC4P09017 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC4P09017 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC4P09017 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC4P09017 AC083899.2-201ENST00000423285 1376 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
HOXC4P09017 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC4P09017 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
HOXC4P09017 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC4P09017 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC4P09017 SNORA62.3-201ENST00000365110 153 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXC4P09017 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC4P09017 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC4P09017 AC092647.1-201ENST00000420654 287 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC4P09017 AC007563.3-201ENST00000433233 371 ntBASIC3.79□□□□□ -1.8
HOXC4P09017 RAD1P2-201ENST00000446414 663 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms