Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RPL23AP38-201ENST00000423801 469 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 MTCO2P23-201ENST00000425216 680 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD4P09016 USP12PY-201ENST00000427677 1064 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 RPS6P12-201ENST00000432491 726 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD4P09016 ELOCP8-201ENST00000439309 332 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 ELOCP15-201ENST00000442090 332 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD4P09016 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD4P09016 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 HMGB3P22-202ENST00000451823 572 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC005229.2-201ENST00000456995 399 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 APOOP2-201ENST00000461561 539 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC104164.3-201ENST00000467363 1258 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 RPL21P47-201ENST00000483696 477 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC107398.1-201ENST00000486904 505 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 HMGB1P38-201ENST00000490557 577 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 UBE2V1P12-201ENST00000503954 474 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 AC020593.1-201ENST00000507399 299 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 RNA5SP315-201ENST00000516340 116 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 RNU6-347P-201ENST00000516658 105 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 RNA5SP312-201ENST00000517068 116 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 CIR1P1-201ENST00000524055 1133 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD4P09016 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD4P09016 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD4P09016 AC087894.1-201ENST00000538359 518 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD4P09016 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD4P09016 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 AC124068.1-201ENST00000563131 678 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC106734.1-201ENST00000568646 663 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC141257.3-201ENST00000572906 215 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC027455.1-201ENST00000574104 594 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC124283.4-201ENST00000581815 456 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 CCDC58P3-201ENST00000590792 430 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 RPL7P50-201ENST00000600588 727 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD4P09016 PSMA6P4-201ENST00000603247 718 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 SUMO2P14-201ENST00000604488 293 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AL591034.3-201ENST00000605511 685 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC063944.3-201ENST00000609969 533 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC124016.2-201ENST00000610058 665 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 uc_338.9-201ENST00000617424 182 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AL512427.1-201ENST00000618593 349 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 MIR6891-201ENST00000618788 93 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 MIR8059-201ENST00000620427 81 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 AC103858.2-201ENST00000621471 543 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.93□□□□□ -1.78
HOXD4P09016 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 OR2L1P-202ENST00000641567 1023 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD4P09016 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 MAPK10-304ENST00000641341 3984 ntBASIC3.93□□□□□ -1.78
HOXD4P09016 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD4P09016 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD4P09016 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXD4P09016 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
HOXD4P09016 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD4P09016 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD4P09016 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD4P09016 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD4P09016 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD4P09016 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXD4P09016 MIR383-201ENST00000362257 73 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 MIR331-201ENST00000362302 94 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 RNU1-132P-201ENST00000364300 164 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 AL138878.1-201ENST00000405131 347 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 ATF1P1-201ENST00000406040 927 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 AC096533.1-201ENST00000411645 353 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 PNRC2P1-201ENST00000423940 420 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 RPL21P91-201ENST00000429231 479 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 RPL12P46-201ENST00000436610 195 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 RRM2P4-201ENST00000441721 562 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 Z95327.1-201ENST00000446082 482 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
HOXD4P09016 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD4P09016 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 SNORA84-201ENST00000459229 133 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD4P09016 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD4P09016 SUMO2P5-201ENST00000506790 245 ntBASIC3.92□□□□□ -1.78
HOXD4P09016 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD4P09016 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms