Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC007562.1-201ENST00000421819 517 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AL589872.1-201ENST00000426602 288 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 MTND4LP10-201ENST00000435146 291 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 RPL23AP33-201ENST00000442301 452 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC023274.2-201ENST00000445264 521 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 RN7SL515P-201ENST00000463999 297 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 RPL21P103-201ENST00000479921 488 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC106872.4-201ENST00000510050 523 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC114781.3-201ENST00000512083 142 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AP003181.2-201ENST00000528941 181 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 SMARCE1P3-201ENST00000553649 1231 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC090651.1-201ENST00000567865 634 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC009101.1-201ENST00000568135 242 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 LLPHP1-201ENST00000603571 367 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC136475.10-201ENST00000620253 385 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC124864.2-201ENST00000624736 186 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 AC027287.1-201ENST00000553115 1453 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 RARSP1-201ENST00000542842 1418 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 MTCO1P24-201ENST00000515438 1558 ntBASIC6.57□□□□□ -1.36
TRAIPQ9BWF2 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 USP44-208ENST00000552440 1818 ntTSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 RNA5SP296-201ENST00000410523 111 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 RNU6-195P-201ENST00000411352 109 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 USP9YP36-201ENST00000424581 829 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC005517.2-201ENST00000424673 553 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 LAMTOR3P1-201ENST00000428620 370 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AL358934.1-201ENST00000432346 324 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 CKS1BP5-201ENST00000434172 273 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 CLUHP1-201ENST00000435012 1190 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AL161636.2-201ENST00000445179 927 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AL590399.6-201ENST00000446396 307 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 MTND1P9-201ENST00000453775 944 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC083795.1-201ENST00000491760 320 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC012170.1-201ENST00000495139 359 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC108078.1-201ENST00000508073 725 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 PGBD4P4-201ENST00000509673 613 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 SNORA70.11-201ENST00000515987 138 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 SNORA70.13-201ENST00000516116 138 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AP003497.1-201ENST00000528472 562 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 PCNAP4-201ENST00000532690 730 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC090424.1-201ENST00000535243 736 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 RNU4ATAC-201ENST00000580972 127 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC011840.5-201ENST00000582125 771 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC090517.2-201ENST00000614966 680 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 WT1-AS_8.1-201ENST00000615200 275 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC126175.1-201ENST00000617041 758 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 MIR6863-201ENST00000636112 90 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 AC073136.1-201ENST00000449426 2884 ntBASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.56□□□□□ -1.36
TRAIPQ9BWF2 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRAIPQ9BWF2 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms