Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RPL26P29-201ENST00000415623 438 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 OR51AB1P-201ENST00000429046 620 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 GSTA7P-201ENST00000438425 448 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 MTND2P25-201ENST00000449028 610 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 RPL23AP23-201ENST00000452590 471 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS39Q96JC1 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 RNA5SP49-201ENST00000516450 115 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 AL442163.2-201ENST00000553912 710 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 SERPINE4P-201ENST00000554978 281 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 AC233309.1-201ENST00000619522 751 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 AC103858.2-201ENST00000621471 543 ntBASIC4.15□□□□□ -1.75
VPS39Q96JC1 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS39Q96JC1 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS39Q96JC1 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS39Q96JC1 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS39Q96JC1 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS39Q96JC1 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS39Q96JC1 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS39Q96JC1 MTND4P21-201ENST00000453886 1357 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 MTCO1P24-201ENST00000515438 1558 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AL512646.1-201ENST00000269395 1077 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AL355379.1-201ENST00000405542 640 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 SNORA11B-201ENST00000408175 129 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 SNORA3C-201ENST00000408792 125 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 RNA5SP39-201ENST00000411245 120 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 PGBD4P8-201ENST00000412993 562 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC019070.1-201ENST00000415008 1024 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AL357078.2-201ENST00000416486 427 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 RPS27AP7-201ENST00000422792 455 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 VDAC1P6-201ENST00000430062 855 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 RPS29P17-201ENST00000430795 166 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 ARL4AP4-201ENST00000434170 518 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 RPS3AP54-201ENST00000435535 734 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AL590762.3-201ENST00000436372 640 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 CEACAMP9-201ENST00000442990 513 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC068135.1-201ENST00000446164 246 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 HMGN2P7-201ENST00000456186 273 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC109327.1-201ENST00000471666 403 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC025181.1-201ENST00000477507 416 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC092451.1-201ENST00000480211 153 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AP001086.1-201ENST00000494882 321 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC078918.1-201ENST00000498515 228 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC146944.2-203ENST00000502493 354 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 TMEM248P1-201ENST00000510579 951 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC005921.1-201ENST00000510589 286 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC139495.1-202ENST00000513164 354 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 IGKV2-38-201ENST00000517443 247 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC004775.1-201ENST00000607389 753 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC018754.1-201ENST00000607486 925 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC095038.2-201ENST00000621464 1070 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 AL356490.1-201ENST00000623079 479 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS39Q96JC1 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 AC026951.1-201ENST00000559530 2459 ntBASIC4.14□□□□□ -1.75
VPS39Q96JC1 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
VPS39Q96JC1 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms