Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 DSTNP4-201ENST00000399472 474 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 SNORA74C-2-201ENST00000411179 201 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RAD23BP1-201ENST00000421404 1227 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC005517.2-201ENST00000424673 553 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 ETF1P3-201ENST00000430422 1160 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 PTP4A1P3-201ENST00000433661 420 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC004865.1-201ENST00000442276 1003 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RN7SL385P-201ENST00000468873 276 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AP000893.1-201ENST00000474462 794 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 ATP1B1P1-201ENST00000509767 915 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RNU6-488P-201ENST00000515918 99 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 C1GALT1P3-201ENST00000522049 819 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC091515.1-201ENST00000548110 679 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 MIR4504-201ENST00000577413 92 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RN7SL652P-201ENST00000577769 300 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC017100.2-201ENST00000584628 355 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC068790.5-201ENST00000602741 355 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 YWHAQP7-201ENST00000603536 658 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC005034.4-201ENST00000603612 899 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC090425.2-201ENST00000608818 501 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC006023.2-201ENST00000609916 167 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC112200.1-201ENST00000625015 234 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 ELL2P4-201ENST00000446870 1376 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 IQCB2P-201ENST00000401788 1633 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AL121972.1-201ENST00000402023 252 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AL356057.1-202ENST00000402263 756 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC004074.1-201ENST00000421810 1063 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC017083.1-201ENST00000428093 483 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 C4BPAP2-201ENST00000428434 478 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 MTND4LP7-201ENST00000431728 294 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 FABP5P3-201ENST00000437960 408 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC239367.2-201ENST00000447309 705 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC108463.1-201ENST00000450258 347 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 RPL23AP62-201ENST00000463396 453 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC104763.1-201ENST00000475274 360 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 RN7SL459P-201ENST00000481078 302 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 RPS26P15-201ENST00000488067 348 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 SCARNA22-201ENST00000503991 125 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC111000.3-201ENST00000508057 576 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC016065.2-201ENST00000514530 444 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC009643.1-201ENST00000532030 391 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AGGF1P8-201ENST00000562979 1000 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 SNRPGP15-201ENST00000600149 222 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC012603.1-201ENST00000606424 528 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 MIR378J-201ENST00000611988 109 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 FRG1HP-204ENST00000617940 757 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AC019278.1-201ENST00000623516 479 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AP003400.6-201ENST00000624698 740 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 FRG1DP-201ENST00000635586 771 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AL031985.3-201ENST00000565390 2449 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms