Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC007423.1-201ENST00000605009 627 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC012603.1-201ENST00000606424 528 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC064801.1-201ENST00000612025 407 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AL445567.2-201ENST00000618935 498 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 MIR6758-201ENST00000620653 63 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AP000720.1-201ENST00000625091 483 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 CFTRP2-201ENST00000634304 199 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 RPS4XP5-202ENST00000449995 1334 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 Z82217.1-201ENST00000625157 8149 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 RPL32P3-201ENST00000359025 275 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 MIR16-2-201ENST00000362117 81 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 OR6K3-202ENST00000368146 996 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 RNU6-317P-201ENST00000384031 107 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AP000357.1-201ENST00000409926 1165 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 RPS24P8-201ENST00000431490 402 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 BTF3P10-201ENST00000433415 495 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 RPL23AP46-201ENST00000438548 490 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AL356535.1-201ENST00000440335 398 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC092685.1-201ENST00000447960 1243 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 RPL7P55-201ENST00000450522 746 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 MTCO2P9-201ENST00000503214 694 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC109458.1-201ENST00000508858 316 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC099522.1-202ENST00000514718 367 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 NARSP2-201ENST00000518524 679 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 HIGD1AP5-201ENST00000529959 259 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AL121594.4-201ENST00000556211 1196 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC084757.1-201ENST00000559987 490 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC104229.1-201ENST00000561364 255 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC093510.2-201ENST00000562820 896 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC022655.2-201ENST00000577280 318 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC011477.5-201ENST00000586571 259 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC012254.4-201ENST00000588843 273 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 MIR432-201ENST00000606207 94 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC005962.2-201ENST00000611427 652 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 MIR486-1-201ENST00000612171 68 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 MIR8084-201ENST00000614105 89 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 U6.48-201ENST00000618523 106 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 U7.8-201ENST00000619968 63 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC095038.2-201ENST00000621464 1070 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 MIR7702-201ENST00000621931 59 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC083865.1-201ENST00000636634 831 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SKA3Q8IX90 AC006042.3-201ENST00000454684 1469 ntBASIC3.66□□□□□ -1.82
SKA3Q8IX90 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA3Q8IX90 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
SKA3Q8IX90 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
SKA3Q8IX90 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
SKA3Q8IX90 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
SKA3Q8IX90 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
SKA3Q8IX90 AC022893.2-201ENST00000564832 3296 ntBASIC3.65□□□□□ -1.82
SKA3Q8IX90 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
SKA3Q8IX90 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 HMGB3P18-201ENST00000406327 590 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms