Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC234772.3-201ENST00000602277 528 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AL020997.3-201ENST00000602843 359 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC022022.2-201ENST00000602989 360 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC016877.3-201ENST00000606778 504 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 FAM27B-201ENST00000610601 213 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AL157770.1-201ENST00000623049 439 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AP003072.4-201ENST00000624580 310 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 RNU6-1151P-201ENST00000384684 107 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AL356320.2-201ENST00000417263 507 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 HIGD1AP12-201ENST00000427832 281 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 ELOCP13-201ENST00000443934 329 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC093166.2-201ENST00000455969 1017 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 RPL21P71-201ENST00000465598 459 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 DSTNP2-201ENST00000504533 515 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 RNA5SP360-201ENST00000516555 118 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC105031.1-201ENST00000518550 476 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC084783.1-201ENST00000565846 910 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 RN7SL176P-201ENST00000580352 264 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC110743.1-201ENST00000584870 478 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC005858.4-201ENST00000623191 700 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AL049536.1-201ENST00000625043 744 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC006927.4-201ENST00000639187 543 ntBASIC4.55□□□□□ -1.68
COL28A1Q2UY09 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.55□□□□□ -1.68
COL28A1Q2UY09 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 ECM1P2-201ENST00000503354 1577 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 RNU6-707P-201ENST00000364647 95 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 RNU4-28P-201ENST00000364739 141 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 SNORA40.2-201ENST00000390847 128 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 TMSB4XP8-201ENST00000402089 135 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 RNU6-628P-201ENST00000410675 107 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 TMSB4XP6-201ENST00000415187 135 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 OR4K6P-201ENST00000416478 897 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 TMSB4XP1-201ENST00000424567 135 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 GTF2IP7-202ENST00000436677 309 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 TPTE2P3-201ENST00000441562 1189 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 RPS27AP15-201ENST00000447672 466 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AL591623.2-201ENST00000449978 222 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms