Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNA5SP477-201ENST00000362639 119 ntBASIC5.56□□□□□ -1.52
RNF4P78317 RNU6-456P-201ENST00000384493 107 ntBASIC5.56□□□□□ -1.52
RNF4P78317 RNU6-441P-201ENST00000384545 106 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC016769.3-201ENST00000396562 315 ntBASIC5.56□□□□□ -1.52
RNF4P78317 FAT1P1-201ENST00000406588 507 ntBASIC5.56□□□□□ -1.52
RNF4P78317 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 RNU2-8P-201ENST00000410727 190 ntBASIC5.56□□□□□ -1.52
RNF4P78317 OR9R1P-201ENST00000412200 877 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 FABP7P1-201ENST00000424004 391 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 OR51AB1P-201ENST00000429046 620 ntBASIC5.56□□□□□ -1.52
RNF4P78317 USP9YP15-201ENST00000442391 422 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 RPS20P20-201ENST00000460498 340 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC021660.1-201ENST00000465006 554 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC124945.1-201ENST00000485133 188 ntBASIC5.56□□□□□ -1.52
RNF4P78317 RPL36AP51-201ENST00000487216 318 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AP001025.2-201ENST00000490908 477 ntBASIC5.56□□□□□ -1.52
RNF4P78317 RN7SL193P-201ENST00000491708 276 ntBASIC5.56□□□□□ -1.52
RNF4P78317 NAF1-205ENST00000509434 385 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 AC106872.4-201ENST00000510050 523 ntBASIC5.56□□□□□ -1.52
RNF4P78317 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
RNF4P78317 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.56□□□□□ -1.52
RNF4P78317 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 AC123904.2-201ENST00000548059 300 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC068714.1-201ENST00000559623 800 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 AC099489.2-201ENST00000574976 260 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.56□□□□□ -1.52
RNF4P78317 AL136131.3-201ENST00000607600 188 ntBASIC5.56□□□□□ -1.52
RNF4P78317 OR10AB1P-201ENST00000609613 938 ntBASIC5.56□□□□□ -1.52
RNF4P78317 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.56□□□□□ -1.52
RNF4P78317 MIR6793-201ENST00000612376 63 ntBASIC5.56□□□□□ -1.52
RNF4P78317 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 AC022400.9-201ENST00000623633 273 ntBASIC5.56□□□□□ -1.52
RNF4P78317 AC144833.1-201ENST00000567953 4089 ntBASIC5.56□□□□□ -1.52
RNF4P78317 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 AC026523.2-201ENST00000625039 7739 ntBASIC5.56□□□□□ -1.52
RNF4P78317 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
RNF4P78317 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
RNF4P78317 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 AF287957.1-201ENST00000607368 1595 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AL049780.3-201ENST00000624612 1583 ntBASIC5.55□□□□□ -1.52
RNF4P78317 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.55□□□□□ -1.52
RNF4P78317 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.55□□□□□ -1.52
RNF4P78317 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
RNF4P78317 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.55□□□□□ -1.52
RNF4P78317 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.55□□□□□ -1.52
RNF4P78317 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 SEPT14P3-201ENST00000439401 183 ntBASIC5.55□□□□□ -1.52
RNF4P78317 RPL36AP15-201ENST00000444514 266 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AL732372.2-207ENST00000445840 183 ntBASIC5.55□□□□□ -1.52
RNF4P78317 SEPT14P2-201ENST00000453405 183 ntBASIC5.55□□□□□ -1.52
RNF4P78317 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 RPS20P32-201ENST00000456044 356 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC104164.1-201ENST00000460282 590 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC094085.1-201ENST00000468914 584 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC090602.1-201ENST00000469695 252 ntBASIC5.55□□□□□ -1.52
RNF4P78317 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.55□□□□□ -1.52
RNF4P78317 RPS4XP18-201ENST00000495480 763 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC090453.1-201ENST00000495560 436 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC008945.1-201ENST00000505144 499 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 SEPT14P4-201ENST00000513445 186 ntBASIC5.55□□□□□ -1.52
RNF4P78317 Y_RNA.667-201ENST00000516212 107 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC060775.1-201ENST00000518241 520 ntBASIC5.55□□□□□ -1.52
RNF4P78317 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 WBP1LP3-201ENST00000523033 208 ntBASIC5.55□□□□□ -1.52
RNF4P78317 FO082796.1-201ENST00000523795 183 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms