Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNA5SP154-201ENST00000516193 111 ntBASIC5.77□□□□□ -1.49
CUX1P39880 AL121603.1-201ENST00000553815 142 ntBASIC5.77□□□□□ -1.49
CUX1P39880 AC138627.1-204ENST00000641894 765 ntBASIC5.77□□□□□ -1.49
CUX1P39880 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC5.77□□□□□ -1.49
CUX1P39880 ZNF807-201ENST00000328088 1707 ntBASIC5.77□□□□□ -1.49
CUX1P39880 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CUX1P39880 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CUX1P39880 RHOT1P2-201ENST00000366423 333 ntBASIC5.76□□□□□ -1.49
CUX1P39880 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.76□□□□□ -1.49
CUX1P39880 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CUX1P39880 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.76□□□□□ -1.49
CUX1P39880 AC021678.1-201ENST00000505195 936 ntBASIC5.76□□□□□ -1.49
CUX1P39880 AC015802.5-201ENST00000607478 399 ntBASIC5.76□□□□□ -1.49
CUX1P39880 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC5.76□□□□□ -1.49
CUX1P39880 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.76□□□□□ -1.49
CUX1P39880 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.76□□□□□ -1.49
CUX1P39880 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
CUX1P39880 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.76□□□□□ -1.49
CUX1P39880 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CUX1P39880 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
CUX1P39880 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.75□□□□□ -1.49
CUX1P39880 HSPA8P19-201ENST00000505359 1517 ntBASIC5.75□□□□□ -1.49
CUX1P39880 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
CUX1P39880 AL603766.1-201ENST00000407763 664 ntBASIC5.75□□□□□ -1.49
CUX1P39880 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.75□□□□□ -1.49
CUX1P39880 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC5.75□□□□□ -1.49
CUX1P39880 BX119904.1-201ENST00000432026 348 ntBASIC5.75□□□□□ -1.49
CUX1P39880 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.75□□□□□ -1.49
CUX1P39880 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC5.75□□□□□ -1.49
CUX1P39880 IGHV3-63-201ENST00000518422 341 ntBASIC5.75□□□□□ -1.49
CUX1P39880 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC5.75□□□□□ -1.49
CUX1P39880 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC5.75□□□□□ -1.49
CUX1P39880 AC233702.9-201ENST00000581528 203 ntBASIC5.75□□□□□ -1.49
CUX1P39880 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC5.75□□□□□ -1.49
CUX1P39880 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.75□□□□□ -1.49
CUX1P39880 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CUX1P39880 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC5.75□□□□□ -1.49
CUX1P39880 OTUD4P1-201ENST00000237841 3067 ntBASIC5.75□□□□□ -1.49
CUX1P39880 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.75□□□□□ -1.49
CUX1P39880 AC083843.3-201ENST00000623679 2186 ntBASIC5.74□□□□□ -1.49
CUX1P39880 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CUX1P39880 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC5.74□□□□□ -1.49
CUX1P39880 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC5.74□□□□□ -1.49
CUX1P39880 USP9YP36-201ENST00000424581 829 ntBASIC5.74□□□□□ -1.49
CUX1P39880 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.74□□□□□ -1.49
CUX1P39880 USP9YP31-201ENST00000431405 881 ntBASIC5.74□□□□□ -1.49
CUX1P39880 AC025750.2-201ENST00000442609 450 ntBASIC5.74□□□□□ -1.49
CUX1P39880 RPL21P6-201ENST00000479171 504 ntBASIC5.74□□□□□ -1.49
CUX1P39880 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.74□□□□□ -1.49
CUX1P39880 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CUX1P39880 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.74□□□□□ -1.49
CUX1P39880 AL121766.1-201ENST00000547436 487 ntBASIC5.74□□□□□ -1.49
CUX1P39880 LARP7P3-201ENST00000579888 337 ntBASIC5.74□□□□□ -1.49
CUX1P39880 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC5.74□□□□□ -1.49
CUX1P39880 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.74□□□□□ -1.49
CUX1P39880 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CUX1P39880 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CUX1P39880 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CUX1P39880 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC5.74□□□□□ -1.49
CUX1P39880 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC5.74□□□□□ -1.49
CUX1P39880 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
CUX1P39880 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CUX1P39880 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
CUX1P39880 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CUX1P39880 SNORA54-201ENST00000384281 123 ntBASIC5.74□□□□□ -1.49
CUX1P39880 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC5.74□□□□□ -1.49
CUX1P39880 AC093698.1-201ENST00000423843 571 ntBASIC5.74□□□□□ -1.49
CUX1P39880 AL158071.1-201ENST00000430315 461 ntBASIC5.74□□□□□ -1.49
CUX1P39880 CCRL1P1-201ENST00000449542 1053 ntBASIC5.74□□□□□ -1.49
CUX1P39880 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC5.74□□□□□ -1.49
CUX1P39880 AC112198.1-201ENST00000505369 1220 ntBASIC5.74□□□□□ -1.49
CUX1P39880 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.74□□□□□ -1.49
CUX1P39880 AC113192.3-201ENST00000529152 742 ntBASIC5.74□□□□□ -1.49
CUX1P39880 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC5.74□□□□□ -1.49
CUX1P39880 AC092747.2-201ENST00000545069 983 ntBASIC5.74□□□□□ -1.49
CUX1P39880 MIR4433B-201ENST00000581329 102 ntBASIC5.74□□□□□ -1.49
CUX1P39880 AL451007.1-201ENST00000595491 289 ntBASIC5.74□□□□□ -1.49
CUX1P39880 RNVU1-4-201ENST00000612985 164 ntBASIC5.74□□□□□ -1.49
CUX1P39880 AC105227.2-201ENST00000615075 605 ntBASIC5.74□□□□□ -1.49
CUX1P39880 AL732372.2-225ENST00000642124 456 ntBASIC5.74□□□□□ -1.49
CUX1P39880 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CUX1P39880 AC083843.2-201ENST00000568248 6253 ntBASIC5.73□□□□□ -1.49
CUX1P39880 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CUX1P39880 AL078595.2-201ENST00000605309 1780 ntBASIC5.73□□□□□ -1.49
CUX1P39880 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CUX1P39880 RNU1-18P-201ENST00000363062 164 ntBASIC5.73□□□□□ -1.49
CUX1P39880 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.73□□□□□ -1.49
CUX1P39880 ELOCP18-201ENST00000434209 337 ntBASIC5.73□□□□□ -1.49
CUX1P39880 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC5.73□□□□□ -1.49
CUX1P39880 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC5.73□□□□□ -1.49
CUX1P39880 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC5.73□□□□□ -1.49
CUX1P39880 AL162274.2-201ENST00000614406 332 ntBASIC5.73□□□□□ -1.49
CUX1P39880 ATP5A1P2-202ENST00000616464 443 ntBASIC5.73□□□□□ -1.49
CUX1P39880 HSP90AA4P-202ENST00000506915 2228 ntBASIC5.73□□□□□ -1.49
CUX1P39880 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.72□□□□□ -1.49
CUX1P39880 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CUX1P39880 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
CUX1P39880 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
CUX1P39880 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
CUX1P39880 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms