Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AP002884.1-201ENST00000479691 655 ntBASIC5.1□□□□□ -1.59
MSX2P35548 LARP1BP2-201ENST00000486594 519 ntBASIC5.1□□□□□ -1.59
MSX2P35548 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
MSX2P35548 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX2P35548 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 AC011352.3-201ENST00000505162 593 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC107982.1-201ENST00000507171 1300 ntBASIC5.1□□□□□ -1.59
MSX2P35548 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.1□□□□□ -1.59
MSX2P35548 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 AC048346.1-201ENST00000510247 144 ntBASIC5.1□□□□□ -1.59
MSX2P35548 DDX18P4-201ENST00000511690 1966 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC046134.1-201ENST00000514454 666 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX2P35548 HMGB1P23-201ENST00000518743 568 ntBASIC5.1□□□□□ -1.59
MSX2P35548 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.1□□□□□ -1.59
MSX2P35548 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 CFL2-206ENST00000556161 546 ntTSL 4 BASIC5.1□□□□□ -1.59
MSX2P35548 MIR3913-1-201ENST00000577744 102 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.1□□□□□ -1.59
MSX2P35548 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 AL117336.2-201ENST00000602435 335 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AL596327.1-201ENST00000603629 213 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC233280.2-201ENST00000603917 1070 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AP004247.3-201ENST00000608682 624 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AP000894.4-201ENST00000610185 483 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX2P35548 AL121757.2-201ENST00000611223 313 ntBASIC5.1□□□□□ -1.59
MSX2P35548 MIR7973-1-201ENST00000614683 76 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC092650.2-201ENST00000619984 902 ntBASIC5.1□□□□□ -1.59
MSX2P35548 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX2P35548 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX2P35548 AC027228.2-201ENST00000567141 2154 ntBASIC5.09□□□□□ -1.59
MSX2P35548 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.09□□□□□ -1.59
MSX2P35548 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
MSX2P35548 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.09□□□□□ -1.59
MSX2P35548 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 MTND4P16-201ENST00000466108 1367 ntBASIC5.09□□□□□ -1.59
MSX2P35548 RPS4XP5-202ENST00000449995 1334 ntBASIC5.09□□□□□ -1.59
MSX2P35548 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
MSX2P35548 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
MSX2P35548 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 RNA5SP433-201ENST00000364491 114 ntBASIC5.09□□□□□ -1.59
MSX2P35548 RN7SKP15-201ENST00000364742 309 ntBASIC5.09□□□□□ -1.59
MSX2P35548 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
MSX2P35548 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 SNORA16A-201ENST00000384342 137 ntBASIC5.09□□□□□ -1.59
MSX2P35548 RNU6-1011P-201ENST00000384668 107 ntBASIC5.09□□□□□ -1.59
MSX2P35548 SNORA40.3-201ENST00000390964 122 ntBASIC5.09□□□□□ -1.59
MSX2P35548 CCNG1P1-201ENST00000406783 885 ntBASIC5.09□□□□□ -1.59
MSX2P35548 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 AC009237.5-201ENST00000414271 501 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AL139413.1-201ENST00000421309 217 ntBASIC5.09□□□□□ -1.59
MSX2P35548 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX2P35548 BTF3P10-201ENST00000433415 495 ntBASIC5.09□□□□□ -1.59
MSX2P35548 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 AL450263.2-201ENST00000439400 589 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX2P35548 AC243772.1-201ENST00000451620 410 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 DNAJB5P1-201ENST00000454004 806 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AC010307.1-201ENST00000467206 836 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.09□□□□□ -1.59
MSX2P35548 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.09□□□□□ -1.59
MSX2P35548 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX2P35548 PRMT5P1-201ENST00000514351 598 ntBASIC5.09□□□□□ -1.59
MSX2P35548 SCARNA18.1-201ENST00000516330 83 ntBASIC5.09□□□□□ -1.59
MSX2P35548 RNU6-885P-201ENST00000516607 104 ntBASIC5.09□□□□□ -1.59
MSX2P35548 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
MSX2P35548 PAICSP4-201ENST00000517543 1253 ntBASIC5.09□□□□□ -1.59
MSX2P35548 FTH1P11-201ENST00000517577 551 ntBASIC5.09□□□□□ -1.59
MSX2P35548 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX2P35548 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.09□□□□□ -1.59
MSX2P35548 MRPS16P1-201ENST00000523462 412 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AP001189.2-201ENST00000527320 189 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AP003396.4-201ENST00000527574 265 ntBASIC5.09□□□□□ -1.59
MSX2P35548 POLR2KP1-201ENST00000553226 168 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AL845552.1-201ENST00000556820 323 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.09□□□□□ -1.59
MSX2P35548 AC138915.2-201ENST00000569776 97 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX2P35548 MIR4502-201ENST00000580432 81 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AC006272.2-201ENST00000594725 163 ntBASIC5.09□□□□□ -1.59
MSX2P35548 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms