Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC244453.4-201ENST00000419150 388 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA9P31269 AL035423.1-201ENST00000420331 213 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 Z74696.2-201ENST00000436514 498 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA9P31269 AC018635.1-201ENST00000468292 1030 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA9P31269 RPS26P15-201ENST00000488067 348 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA9P31269 AC025554.1-201ENST00000505641 188 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 AC017037.1-201ENST00000508460 471 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA9P31269 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA9P31269 UBTFL9-201ENST00000534504 1148 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA9P31269 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA9P31269 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXA9P31269 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA9P31269 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA9P31269 AC012603.1-201ENST00000606424 528 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 AL391597.1-201ENST00000618707 694 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA9P31269 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA9P31269 AC097504.1-201ENST00000515103 2415 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 ZNF962P-201ENST00000443465 3140 ntBASIC4.04□□□□□ -1.76
HOXA9P31269 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
HOXA9P31269 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA9P31269 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA9P31269 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA9P31269 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA9P31269 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXA9P31269 RNU6-697P-201ENST00000363348 107 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA9P31269 MIR34B-201ENST00000385076 84 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXA9P31269 ATP5F1P4-201ENST00000397288 746 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 RN7SKP177-201ENST00000410567 355 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 RNA5SP306-201ENST00000411087 107 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA9P31269 TRGV6-201ENST00000417928 299 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 HMGN2P31-201ENST00000432430 273 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA9P31269 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA9P31269 CYCSP43-201ENST00000438233 310 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA9P31269 SETD6P1-201ENST00000444575 317 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA9P31269 AC106707.2-201ENST00000484182 374 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA9P31269 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA9P31269 HMGN1P15-201ENST00000513870 295 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 RNU6-347P-201ENST00000516658 105 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 IGKV2-38-201ENST00000517443 247 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AC008802.1-201ENST00000519121 791 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
HOXA9P31269 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA9P31269 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
HOXA9P31269 RN7SL339P-201ENST00000580597 296 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 VN1R79P-201ENST00000593540 513 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXA9P31269 SRGNP1-201ENST00000603392 451 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AC007179.3-201ENST00000604976 235 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 U3.45-201ENST00000607547 219 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA9P31269 AC019131.2-201ENST00000609071 870 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AC007342.8-201ENST00000623278 678 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AC145207.9-201ENST00000623802 325 ntBASIC4.03□□□□□ -1.76
HOXA9P31269 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA9P31269 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA9P31269 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.03□□□□□ -1.76
HOXA9P31269 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA9P31269 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
HOXA9P31269 AC007342.7-201ENST00000624610 2337 ntBASIC4.03□□□□□ -1.77
HOXA9P31269 AC008725.1-201ENST00000605123 2263 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA9P31269 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HOXA9P31269 AL049781.1-201ENST00000623195 3585 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 MTCO1P8-201ENST00000416914 1523 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA9P31269 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA9P31269 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA9P31269 XIAPP3-201ENST00000312918 795 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA9P31269 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA9P31269 AL034374.1-201ENST00000406329 351 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA9P31269 RPS29P4-201ENST00000414733 161 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 RAC1P3-201ENST00000416129 580 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 KRR1P1-201ENST00000419430 803 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA9P31269 CACYBPP1-201ENST00000438592 684 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 RANP8-201ENST00000444720 713 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA9P31269 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA9P31269 SNRPGP5-201ENST00000456003 220 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 RPS6P4-201ENST00000494693 758 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXA9P31269 AC110768.1-201ENST00000509222 400 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA9P31269 RN7SKP18-201ENST00000516005 275 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms