Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL109618.2-201ENST00000605527 211 ntBASIC2.95□□□□□ -1.94
HLA-DMBP28068 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC2.95□□□□□ -1.94
HLA-DMBP28068 MIR6875-201ENST00000617506 72 ntBASIC2.95□□□□□ -1.94
HLA-DMBP28068 AC073530.2-201ENST00000623987 261 ntBASIC2.95□□□□□ -1.94
HLA-DMBP28068 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
HLA-DMBP28068 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.95□□□□□ -1.94
HLA-DMBP28068 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
HLA-DMBP28068 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
HLA-DMBP28068 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
HLA-DMBP28068 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HLA-DMBP28068 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC2.95□□□□□ -1.94
HLA-DMBP28068 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HLA-DMBP28068 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HLA-DMBP28068 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HLA-DMBP28068 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HLA-DMBP28068 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HLA-DMBP28068 MIR320B1-201ENST00000390209 79 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AL445189.1-201ENST00000405722 338 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 LSM5-206ENST00000409987 504 ntTSL 5 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 OR8G2P-201ENST00000412796 908 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 HMGB3P5-201ENST00000428894 612 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 RPL21P89-201ENST00000444021 467 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 MTCO3P20-201ENST00000454926 688 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC018635.1-201ENST00000468292 1030 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AL049830.2-201ENST00000480072 201 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC110792.1-201ENST00000491826 472 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC004069.2-201ENST00000505438 1114 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC021146.1-201ENST00000511202 716 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 RNA5SP208-201ENST00000516156 78 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC008802.1-201ENST00000519121 791 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC087369.1-201ENST00000520775 996 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC091516.1-201ENST00000549191 703 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC099489.2-201ENST00000574976 260 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 FAM60CP-201ENST00000591086 664 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 BMS1P7-201ENST00000602440 1052 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC099676.1-201ENST00000608886 657 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AL133370.2-201ENST00000619934 439 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AL161637.1-201ENST00000622380 412 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 RPL23AP61-201ENST00000623642 466 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC091905.1-201ENST00000624400 311 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 AC100871.1-201ENST00000507871 1456 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 AP002001.2-201ENST00000529025 1469 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 ASNSP1-204ENST00000641977 1664 ntBASIC2.94□□□□□ -1.94
HLA-DMBP28068 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HLA-DMBP28068 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC2.94□□□□□ -1.94
HLA-DMBP28068 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HLA-DMBP28068 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HLA-DMBP28068 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 SNORD65-201ENST00000391079 73 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 HMGN2P8-201ENST00000391458 268 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 RNU6ATAC34P-201ENST00000408879 121 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 CASKP1-201ENST00000412870 582 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 RPL30P3-201ENST00000424262 333 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC009965.2-201ENST00000425328 970 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 IFNNP1-201ENST00000429219 553 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 CDC27P1-201ENST00000445384 715 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 RPL23AP62-201ENST00000463396 453 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 CCNHP1-201ENST00000513311 678 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC108064.1-201ENST00000513791 460 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 OR4A12P-201ENST00000530847 918 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 149.1 ms