Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.33□□□□□ -1.72
COL5A3P25940 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.33□□□□□ -1.72
COL5A3P25940 AL162274.2-201ENST00000614406 332 ntBASIC4.33□□□□□ -1.72
COL5A3P25940 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.33□□□□□ -1.72
COL5A3P25940 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.33□□□□□ -1.72
COL5A3P25940 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.33□□□□□ -1.72
COL5A3P25940 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A3P25940 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.33□□□□□ -1.72
COL5A3P25940 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A3P25940 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.33□□□□□ -1.72
COL5A3P25940 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.32□□□□□ -1.72
COL5A3P25940 BX119904.1-201ENST00000432026 348 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A3P25940 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.32□□□□□ -1.72
COL5A3P25940 RPL27AP5-201ENST00000469428 449 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 AC020914.4-201ENST00000597690 277 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A3P25940 AC119674.1-212ENST00000641155 993 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A3P25940 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A3P25940 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL5A3P25940 SNORA54-201ENST00000384281 123 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 RPL23AP69-201ENST00000431134 458 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 AL353705.1-201ENST00000433468 480 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 AC005798.1-201ENST00000513715 387 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 FTH1P11-201ENST00000517577 551 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 AP003392.5-201ENST00000607857 415 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 RNVU1-4-201ENST00000612985 164 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 AL732372.2-225ENST00000642124 456 ntBASIC4.32□□□□□ -1.72
COL5A3P25940 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.32□□□□□ -1.72
COL5A3P25940 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A3P25940 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL5A3P25940 NMD3P1-201ENST00000439704 1488 ntBASIC4.31□□□□□ -1.72
COL5A3P25940 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.31□□□□□ -1.72
COL5A3P25940 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A3P25940 TAF9BP1-201ENST00000396646 746 ntBASIC4.31□□□□□ -1.72
COL5A3P25940 RPL23AP82-202ENST00000427528 469 ntBASIC4.31□□□□□ -1.72
COL5A3P25940 CENPBD1P1-201ENST00000464061 469 ntBASIC4.31□□□□□ -1.72
COL5A3P25940 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.31□□□□□ -1.72
COL5A3P25940 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.31□□□□□ -1.72
COL5A3P25940 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.31□□□□□ -1.72
COL5A3P25940 ATP5A1P2-202ENST00000616464 443 ntBASIC4.31□□□□□ -1.72
COL5A3P25940 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.31□□□□□ -1.72
COL5A3P25940 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.31□□□□□ -1.72
COL5A3P25940 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.31□□□□□ -1.72
COL5A3P25940 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A3P25940 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
COL5A3P25940 HSPA8P19-201ENST00000505359 1517 ntBASIC4.31□□□□□ -1.72
COL5A3P25940 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A3P25940 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A3P25940 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A3P25940 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.31□□□□□ -1.72
COL5A3P25940 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A3P25940 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A3P25940 SMG1P4-204ENST00000523028 4131 ntBASIC4.3□□□□□ -1.72
COL5A3P25940 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.3□□□□□ -1.72
COL5A3P25940 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A3P25940 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL5A3P25940 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A3P25940 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
COL5A3P25940 SNORA44-201ENST00000384584 132 ntBASIC4.3□□□□□ -1.72
COL5A3P25940 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.3□□□□□ -1.72
COL5A3P25940 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A3P25940 RNF19BPX-201ENST00000426224 625 ntBASIC4.3□□□□□ -1.72
COL5A3P25940 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.3□□□□□ -1.72
COL5A3P25940 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A3P25940 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.3□□□□□ -1.72
COL5A3P25940 RNA5SP154-201ENST00000516193 111 ntBASIC4.3□□□□□ -1.72
COL5A3P25940 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.3□□□□□ -1.72
COL5A3P25940 AC004024.1-201ENST00000549244 247 ntBASIC4.3□□□□□ -1.72
COL5A3P25940 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A3P25940 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A3P25940 AC006272.2-201ENST00000594725 163 ntBASIC4.3□□□□□ -1.72
COL5A3P25940 MTCO3P22-201ENST00000603219 784 ntBASIC4.3□□□□□ -1.72
COL5A3P25940 AC093732.2-201ENST00000607950 274 ntBASIC4.3□□□□□ -1.72
COL5A3P25940 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
COL5A3P25940 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.3□□□□□ -1.72
COL5A3P25940 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A3P25940 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.3□□□□□ -1.72
COL5A3P25940 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
COL5A3P25940 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A3P25940 Z99755.1-201ENST00000414048 380 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.29□□□□□ -1.72
COL5A3P25940 RPSAP41-201ENST00000439695 860 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 ANP32BP2-201ENST00000454525 545 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A3P25940 RN7SL863P-201ENST00000462370 296 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.29□□□□□ -1.72
COL5A3P25940 AC011825.1-201ENST00000484967 388 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 139.8 ms