Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC008507.1-201ENST00000587506 734 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC105254.2-201ENST00000603636 436 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AC008814.1-201ENST00000603797 406 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A1P12109 AL356266.1-201ENST00000623311 483 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AC116618.1-201ENST00000634617 774 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A1P12109 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
COL6A1P12109 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A1P12109 MAPK10-304ENST00000641341 3984 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC093535.2-201ENST00000624769 2326 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
COL6A1P12109 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
COL6A1P12109 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 RNA5SP191-201ENST00000362585 102 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 RNY3P14-201ENST00000384309 102 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 Z97832.1-201ENST00000402490 328 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.73□□□□□ -1.49
COL6A1P12109 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A1P12109 AL596276.1-201ENST00000434465 418 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 FTH1P16-201ENST00000435241 552 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A1P12109 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A1P12109 USP9YP29-201ENST00000445112 563 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AC005002.1-201ENST00000447458 540 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A1P12109 AC079776.3-201ENST00000450665 370 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A1P12109 AC116353.2-201ENST00000505332 712 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AC090071.1-201ENST00000507713 644 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 RN7SKP122-201ENST00000515923 296 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 AC124293.1-201ENST00000530034 493 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AC092747.2-201ENST00000545069 983 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.73□□□□□ -1.49
COL6A1P12109 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.73□□□□□ -1.49
COL6A1P12109 AC068446.3-201ENST00000555285 382 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 BNIP3P5-201ENST00000562290 498 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 MIR1254-2-201ENST00000579553 63 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A1P12109 RN7SL690P-201ENST00000582087 240 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AL512782.1-201ENST00000603093 364 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AC011453.2-201ENST00000603737 729 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AL139124.1-201ENST00000609123 421 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AC012409.3-201ENST00000611343 981 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 AC015712.7-201ENST00000615211 635 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A1P12109 AP003400.3-201ENST00000624904 346 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 CR392039.4-201ENST00000624968 501 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A1P12109 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A1P12109 SEPT14P19-203ENST00000633205 211 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 OR2L1P-202ENST00000641567 1023 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.73□□□□□ -1.49
COL6A1P12109 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 BCORP1-203ENST00000513194 5093 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
COL6A1P12109 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.73□□□□□ -1.49
COL6A1P12109 AL355488.2-201ENST00000609909 2850 ntBASIC5.73□□□□□ -1.49
COL6A1P12109 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A1P12109 RNF6P1-201ENST00000444889 1784 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC011933.2-201ENST00000578539 2790 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 AC006206.1-201ENST00000544842 3387 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 AC079097.1-201ENST00000512187 1399 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.72□□□□□ -1.49
COL6A1P12109 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL6A1P12109 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms