Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MTND4P20-201ENST00000424125 869 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 SGO1P2-201ENST00000429458 1589 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC010153.1-201ENST00000432862 727 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 RPS26P30-201ENST00000443431 335 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AL606662.1-201ENST00000445763 553 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC005002.1-201ENST00000447458 540 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC007327.1-201ENST00000447461 264 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 VN1R32P-201ENST00000452234 905 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC097262.1-201ENST00000452559 548 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC079168.2-201ENST00000453977 416 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 ANKRD26P4-201ENST00000455755 950 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4.08□□□□□ -1.76
LMX1BO60663 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.08□□□□□ -1.76
LMX1BO60663 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC103987.1-201ENST00000473394 348 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 DEFB109F-201ENST00000491870 277 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC104090.1-201ENST00000506341 1171 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 MTCYBP37-201ENST00000510642 1133 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.08□□□□□ -1.76
LMX1BO60663 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
LMX1BO60663 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC083923.1-201ENST00000523708 376 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC4.08□□□□□ -1.76
LMX1BO60663 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LMX1BO60663 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.08□□□□□ -1.76
LMX1BO60663 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.08□□□□□ -1.76
LMX1BO60663 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC010198.2-201ENST00000550612 259 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC024909.2-201ENST00000553035 286 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC074050.1-201ENST00000563247 211 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 CYP2C60P-201ENST00000566088 139 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 MIR4675-201ENST00000577898 77 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC119751.7-201ENST00000600494 245 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC068790.7-201ENST00000602347 528 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 MRPS35P3-201ENST00000603189 709 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.08□□□□□ -1.76
LMX1BO60663 AC106791.2-201ENST00000604680 391 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AC097505.1-201ENST00000610199 565 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 FAM27B-201ENST00000610601 213 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 AL136164.3-201ENST00000624429 3978 ntBASIC4.08□□□□□ -1.76
LMX1BO60663 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
LMX1BO60663 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LMX1BO60663 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LMX1BO60663 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LMX1BO60663 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.08□□□□□ -1.76
LMX1BO60663 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
LMX1BO60663 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LMX1BO60663 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 KARSP3-201ENST00000571212 1504 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.07□□□□□ -1.76
LMX1BO60663 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 RNU6-623P-201ENST00000363143 105 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 RNU4-7P-201ENST00000364758 141 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC068538.1-201ENST00000376856 336 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
LMX1BO60663 RNU6-575P-201ENST00000411326 105 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 RPL21P43-201ENST00000425440 472 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AL035407.1-201ENST00000429211 571 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 DLGAP5P1-201ENST00000430307 464 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.07□□□□□ -1.76
LMX1BO60663 HMGB1P45-201ENST00000435986 653 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 ARAFP2-201ENST00000440565 559 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 RPL36AP15-201ENST00000444514 266 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 ARL5AP2-201ENST00000444698 533 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 TAF9P1-201ENST00000445421 515 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC104651.2-201ENST00000447549 528 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.07□□□□□ -1.76
LMX1BO60663 MTND1P27-201ENST00000451117 902 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.07□□□□□ -1.76
LMX1BO60663 TAF9P2-201ENST00000454958 515 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 AC091959.2-201ENST00000477363 321 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC080014.1-201ENST00000496877 1201 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC021146.8-201ENST00000507455 733 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.07□□□□□ -1.76
LMX1BO60663 OR5H4P-201ENST00000510851 923 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.07□□□□□ -1.76
LMX1BO60663 RNU6-232P-201ENST00000517144 64 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms