Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.73□□□□□ -1.17
PDZRN3Q9UPQ7 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 FARSBP1-201ENST00000435808 1778 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 RNU4-20P-201ENST00000365601 151 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AL121834.1-202ENST00000404494 277 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 OR3A2-201ENST00000408891 1076 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AL354890.1-201ENST00000413730 346 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 ELOCP4-201ENST00000420090 333 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 PIGFP2-201ENST00000421400 651 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AL831737.1-201ENST00000441288 271 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 GAPDHP23-201ENST00000444823 993 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 RPL36AP39-201ENST00000445859 318 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 RNU6-835P-201ENST00000516974 104 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AC011840.5-201ENST00000582125 771 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AL137067.2-201ENST00000621202 131 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AC099494.2-201ENST00000623371 978 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 AC011416.1-201ENST00000514947 1732 ntBASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
PDZRN3Q9UPQ7 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.17
PDZRN3Q9UPQ7 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
PDZRN3Q9UPQ7 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC7.71□□□□□ -1.17
PDZRN3Q9UPQ7 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
PDZRN3Q9UPQ7 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.17
PDZRN3Q9UPQ7 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AL592429.1-201ENST00000403909 1473 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 TMSB4XP2-201ENST00000335179 210 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 Y_RNA.112-201ENST00000363250 102 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 SNORD113-1-201ENST00000365321 69 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 RPL23AP17-201ENST00000401064 499 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 BX890604.2-201ENST00000427883 474 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 PCBP2P1-201ENST00000437262 977 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC104332.1-201ENST00000440471 797 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 GAPDHP56-201ENST00000506031 988 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC093303.1-201ENST00000514549 295 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC009902.1-201ENST00000519351 183 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AP003467.2-201ENST00000520175 319 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC022878.1-201ENST00000530684 149 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 OR5D15P-201ENST00000531671 942 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 MIR4489-201ENST00000578869 62 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC112191.3-201ENST00000604371 277 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC004890.3-201ENST00000605566 1095 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC110994.2-201ENST00000635481 492 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 AC022325.1-201ENST00000502748 2199 ntBASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.71□□□□□ -1.18
PDZRN3Q9UPQ7 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 WDR95P-201ENST00000425638 1542 ntBASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC7.7□□□□□ -1.18
PDZRN3Q9UPQ7 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms