Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MAPK10-338ENST00000641647 3362 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 Y_RNA.25-201ENST00000362528 102 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 RNU4-21P-201ENST00000362802 126 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 Y_RNA.553-201ENST00000384670 102 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 Y_RNA.559-201ENST00000384686 107 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 RNA5SP241-201ENST00000391326 114 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC013442.1-201ENST00000397347 228 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 RPS4XP9-201ENST00000405151 780 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 RNA5SP113-201ENST00000410486 84 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 RNU2-50P-201ENST00000410494 143 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC002524.1-201ENST00000411687 547 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 USP9YP33-201ENST00000412220 421 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 FAR2P2-201ENST00000413041 594 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 OR6C64P-201ENST00000419708 825 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC062016.2-201ENST00000420950 676 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 FAR2P4-202ENST00000425399 584 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 B3GNT2P1-201ENST00000434960 952 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 USP9YP35-201ENST00000435696 412 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 MTND1P30-201ENST00000441241 901 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC004980.3-201ENST00000447046 365 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 TPT1P13-201ENST00000449760 499 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 RPL23AP15-201ENST00000450202 459 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC243772.1-201ENST00000451620 410 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 ZNF114P1-201ENST00000453500 292 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AL354710.1-201ENST00000453641 246 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 HMGB1P28-201ENST00000507778 552 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 RPS27AP18-201ENST00000515536 459 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC060788.1-201ENST00000521318 469 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC079075.1-201ENST00000559543 878 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC019322.1-201ENST00000571869 389 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC091042.1-201ENST00000579213 173 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 U73023.1-201ENST00000603134 700 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 PSMA6P4-201ENST00000603247 718 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC024560.3-201ENST00000608482 349 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AL391497.1-201ENST00000608671 547 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AL122125.1-201ENST00000616999 600 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC092650.2-201ENST00000619984 902 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 AC084035.1-201ENST00000634543 607 ntBASIC5.19□□□□□ -1.58
TDP1Q9NUW8 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AP000473.2-201ENST00000602659 1537 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 SAMMSON-226ENST00000642089 1582 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 U3.4-201ENST00000363352 213 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 RPL23AP29-201ENST00000397284 453 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 GSTM3P2-201ENST00000412746 530 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 NPM1P40-201ENST00000412758 733 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 GNG5P5-201ENST00000420444 220 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC233981.1-201ENST00000423224 461 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 COX6CP13-201ENST00000428703 226 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 RPS29P9-201ENST00000440360 171 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 RPL5P25-201ENST00000441148 775 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 MTCO1P19-201ENST00000443487 500 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 ELOCP30-201ENST00000447108 299 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC008897.1-201ENST00000494006 347 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 IGKV1-32-201ENST00000519290 311 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 MTCYBP20-201ENST00000524239 1129 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms