Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL031666.3-201ENST00000609320 1006 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC103858.2-201ENST00000621471 543 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 RNU6-356P-201ENST00000384140 107 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 RNA5SP171-201ENST00000391071 115 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AP000357.1-201ENST00000409926 1165 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 RN7SKP159-201ENST00000410657 292 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 OR8F1P-201ENST00000425243 930 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AP000873.1-201ENST00000463987 400 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AF213884.1-201ENST00000488102 463 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC090543.1-201ENST00000492168 485 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC146944.2-203ENST00000502493 354 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 NPM1P41-201ENST00000512920 831 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC139495.1-202ENST00000513164 354 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 RNA5SP309-201ENST00000516670 106 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 CENPUP2-201ENST00000555897 1186 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AL121594.4-201ENST00000556211 1196 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 RPL23AP97-201ENST00000568955 471 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AP000919.1-202ENST00000581139 1264 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC025946.2-201ENST00000603398 234 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AL049634.3-201ENST00000604968 457 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 AC008013.2-202ENST00000637965 364 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 NMD3P1-201ENST00000439704 1488 ntBASIC4.18□□□□□ -1.74
TM9SF3Q9HD45 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 ERCC6-202ENST00000374127 1782 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 OR11H4-201ENST00000315409 1082 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 MIR670-201ENST00000390142 98 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 RPS23P10-201ENST00000416185 486 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 HMGB3P5-201ENST00000428894 612 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 PRELID3BP10-201ENST00000431957 584 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 RPL23AP46-201ENST00000438548 490 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 RNA5SP246-201ENST00000458909 119 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 AC096992.1-201ENST00000459808 709 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 RPS26P15-201ENST00000488067 348 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 RN7SL604P-201ENST00000492589 296 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 AC108157.1-201ENST00000510511 539 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 AC005351.1-201ENST00000511152 786 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 RNU6-889P-201ENST00000517189 103 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 LINC00216-201ENST00000623548 1126 ntBASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TM9SF3Q9HD45 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TM9SF3Q9HD45 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.16□□□□□ -1.74
TM9SF3Q9HD45 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TM9SF3Q9HD45 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.16□□□□□ -1.74
TM9SF3Q9HD45 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TM9SF3Q9HD45 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.16□□□□□ -1.74
TM9SF3Q9HD45 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms