Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC42Q96M95 PRO1804-201ENST00000623780 2050 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC42Q96M95 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC42Q96M95 RNU6-328P-201ENST00000390887 106 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC42Q96M95 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 RN7SKP285-201ENST00000410137 318 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 RNA5SP317-201ENST00000410176 116 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 RNA5SP311-201ENST00000411290 116 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 OR8F1P-201ENST00000425243 930 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC42Q96M95 AC006326.1-201ENST00000445465 787 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 TPT1P13-201ENST00000449760 499 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 RPL7P31-201ENST00000450192 724 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 RPL7P48-201ENST00000461513 746 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 FCF1P3-201ENST00000496394 590 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 MGST2-204ENST00000506797 634 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 ARL2BPP6-201ENST00000512757 439 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 RNA5SP315-201ENST00000516340 116 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 RNU6-352P-201ENST00000516908 107 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 RNA5SP312-201ENST00000517068 116 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 IGKV2-23-201ENST00000518729 323 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 AP000926.4-201ENST00000527351 454 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 CYCSP30-201ENST00000546447 172 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 TGIF1P1-201ENST00000558095 802 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 BNIP3P38-201ENST00000601117 544 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 AC092628.2-201ENST00000622492 339 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 FP236240.3-201ENST00000623061 327 ntBASIC3.91□□□□□ -1.78
CCDC42Q96M95 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC42Q96M95 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
CCDC42Q96M95 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC42Q96M95 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC42Q96M95 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC42Q96M95 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 AL138785.1-201ENST00000425821 331 ntBASIC3.9□□□□□ -1.79
CCDC42Q96M95 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 HMGB3P21-201ENST00000452483 547 ntBASIC3.9□□□□□ -1.79
CCDC42Q96M95 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 RNU2-27P-201ENST00000516185 142 ntBASIC3.9□□□□□ -1.79
CCDC42Q96M95 PDCL2P2-201ENST00000533651 189 ntBASIC3.9□□□□□ -1.79
CCDC42Q96M95 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 MIR3186-201ENST00000577404 85 ntBASIC3.9□□□□□ -1.79
CCDC42Q96M95 AC006077.1-201ENST00000604746 343 ntBASIC3.9□□□□□ -1.79
CCDC42Q96M95 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 RMST_8.1-201ENST00000610287 165 ntBASIC3.9□□□□□ -1.79
CCDC42Q96M95 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC42Q96M95 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC42Q96M95 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC42Q96M95 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC42Q96M95 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
CCDC42Q96M95 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC42Q96M95 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC42Q96M95 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC42Q96M95 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 AC084357.1-201ENST00000473404 255 ntBASIC3.89□□□□□ -1.79
CCDC42Q96M95 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC42Q96M95 RNU6-579P-201ENST00000516879 102 ntBASIC3.89□□□□□ -1.79
CCDC42Q96M95 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 AL365503.1-201ENST00000605247 905 ntBASIC3.89□□□□□ -1.79
CCDC42Q96M95 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC42Q96M95 AC068647.1-201ENST00000489539 2265 ntBASIC3.89□□□□□ -1.79
CCDC42Q96M95 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC42Q96M95 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC42Q96M95 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC42Q96M95 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC42Q96M95 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC42Q96M95 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC42Q96M95 FAM91A3P-201ENST00000456826 2544 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms