Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC011978.2-201ENST00000569835 2054 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS39Q96JC1 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS39Q96JC1 RNA5SP513-201ENST00000364648 118 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 SNORA37-201ENST00000384504 129 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 PRRC2CP1-201ENST00000404428 159 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 RNA5SP306-201ENST00000411087 107 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 NANOGP6-201ENST00000429190 847 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 CKS1BP5-201ENST00000434172 273 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 RPL9P32-201ENST00000464118 620 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 RPL35P6-201ENST00000490024 372 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC023141.12-201ENST00000512399 199 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 HNRNPKP5-201ENST00000515300 253 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 RNA5SP519-201ENST00000516480 119 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC010476.1-201ENST00000519111 851 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 MIR4330-201ENST00000579077 105 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC007687.1-201ENST00000602704 304 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC023043.4-201ENST00000612081 449 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS39Q96JC1 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.17□□□□□ -1.74
VPS39Q96JC1 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS39Q96JC1 AL158163.1-201ENST00000603915 1649 ntBASIC4.17□□□□□ -1.74
VPS39Q96JC1 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS39Q96JC1 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 RNU6-883P-201ENST00000384597 107 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 BTBD10P2-201ENST00000404779 676 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 MTATP6P19-201ENST00000413797 659 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 JKAMPP1-201ENST00000413804 919 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC092809.1-201ENST00000441469 474 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 Z95152.1-201ENST00000453556 656 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 RPS29P33-201ENST00000456717 146 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 RPL36AP13-201ENST00000457490 317 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 RPL23AP24-201ENST00000458203 385 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 snoU13.1-201ENST00000459157 104 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 RN7SL738P-201ENST00000470264 297 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 RN7SL691P-201ENST00000494487 301 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC139783.2-201ENST00000504847 1145 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 KCTD9P2-201ENST00000512203 1013 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 RNU2-58P-201ENST00000516403 183 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AP004242.1-201ENST00000533701 349 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC068831.4-201ENST00000556118 109 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC007599.1-201ENST00000568688 1174 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 MIR4715-201ENST00000584117 79 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC068790.5-201ENST00000602741 355 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC083865.1-201ENST00000636634 831 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
VPS39Q96JC1 Z82217.1-201ENST00000625157 8149 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS39Q96JC1 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS39Q96JC1 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS39Q96JC1 MAPK10-253ENST00000641010 4072 ntBASIC4.16□□□□□ -1.74
VPS39Q96JC1 AC106871.1-201ENST00000568324 3102 ntBASIC4.15□□□□□ -1.74
VPS39Q96JC1 EXOC5P1-201ENST00000510543 1969 ntBASIC4.15□□□□□ -1.74
VPS39Q96JC1 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms