Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AC006539.3-201ENST00000454258 129 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AL136097.1-201ENST00000456945 913 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 FAM133DP-201ENST00000464802 691 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 RPS3AP50-201ENST00000487064 803 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 SLC25A15P5-201ENST00000508033 253 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 SNORA70.14-201ENST00000516205 110 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 RNA5SP179-201ENST00000517284 121 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 MIR4286-201ENST00000580651 93 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 BNIP3P33-201ENST00000598912 569 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AC091167.4-201ENST00000605079 184 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 RNU4-89P-201ENST00000607443 133 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AC245389.2-201ENST00000616023 576 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AC242843.1-201ENST00000618702 573 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AL161637.1-201ENST00000622380 412 ntBASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC112Q8NEF3 AC114546.3-201ENST00000623582 1734 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AL691447.1-201ENST00000419456 387 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 RPS15AP6-201ENST00000420703 385 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 MRPL50P1-201ENST00000431951 384 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 OR4C10P-201ENST00000434991 931 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC006480.1-201ENST00000449887 378 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 RPL21P129-201ENST00000491732 478 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 MED28P5-201ENST00000528254 438 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 NPM1P47-201ENST00000560843 856 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC115621.1-201ENST00000604653 858 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 GMCL1P2-201ENST00000605230 823 ntBASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC112Q8NEF3 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 MFSD8-236ENST00000641509 4050 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AC007685.1-201ENST00000329806 452 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AL136116.1-201ENST00000403591 381 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 RN7SKP33-201ENST00000410942 340 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 OSTCP5-201ENST00000425293 453 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 RPL7P2-201ENST00000427639 268 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AC017083.1-201ENST00000428093 483 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 RPL7AP52-201ENST00000458096 790 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 RN7SL132P-201ENST00000478131 296 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AP000926.1-201ENST00000479573 241 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 RAC1P2-201ENST00000511164 579 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 MTND4LP31-201ENST00000514859 294 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 RNA5SP208-201ENST00000516156 78 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AC116447.1-201ENST00000613153 453 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 RNA5SP196-201ENST00000625967 102 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 EXOC5P1-201ENST00000510543 1969 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 AC007529.1-201ENST00000418574 2178 ntBASIC4.12□□□□□ -1.75
CCDC112Q8NEF3 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 RNU6-146P-201ENST00000384602 108 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 MIR23B-201ENST00000384832 97 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 CASKP1-201ENST00000412870 582 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms